Variant report

Variant	rs355364
Chromosome Location	chr1:98614478-98614479
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs1118413	0.99[ASN][1000 genomes]
rs1198584	0.95[ASN][1000 genomes]
rs12059959	0.87[ASN][1000 genomes]
rs1487295	0.96[ASN][1000 genomes]
rs1507064	0.97[ASN][1000 genomes]
rs1507070	0.99[ASN][1000 genomes]
rs1507071	0.95[ASN][1000 genomes]
rs1911500	0.95[ASN][1000 genomes]
rs2200585	0.97[ASN][1000 genomes]
rs2220332	0.97[ASN][1000 genomes]
rs2253341	0.97[ASN][1000 genomes]
rs2263255	0.97[ASN][1000 genomes]
rs2391906	0.97[ASN][1000 genomes]
rs2632303	0.97[ASN][1000 genomes]
rs2632304	0.95[ASN][1000 genomes]
rs2632308	0.97[ASN][1000 genomes]
rs2632311	0.97[ASN][1000 genomes]
rs2660306	0.97[ASN][1000 genomes]
rs2660307	0.96[ASN][1000 genomes]
rs2660308	0.97[ASN][1000 genomes]
rs2660309	0.97[ASN][1000 genomes]
rs2660310	0.97[ASN][1000 genomes]
rs2660311	0.96[ASN][1000 genomes]
rs2660312	0.92[ASN][1000 genomes]
rs2939963	0.97[ASN][1000 genomes]
rs355354	0.99[ASN][1000 genomes]
rs355356	0.99[ASN][1000 genomes]
rs355357	0.99[ASN][1000 genomes]
rs355363	0.99[ASN][1000 genomes]
rs355365	0.99[ASN][1000 genomes]
rs355366	0.99[ASN][1000 genomes]
rs355368	0.99[ASN][1000 genomes]
rs355369	0.96[ASN][1000 genomes]
rs355371	0.99[ASN][1000 genomes]
rs355372	0.99[ASN][1000 genomes]
rs355374	0.95[ASN][1000 genomes]
rs355375	0.95[ASN][1000 genomes]
rs355380	0.94[ASN][1000 genomes]
rs355387	0.96[ASN][1000 genomes]
rs7528365	0.95[ASN][1000 genomes]
rs822564	0.96[ASN][1000 genomes]
rs822565	0.97[ASN][1000 genomes]
rs9440334	0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1012958	chr1:98081528-98864746	Weak transcription Enhancers Strong transcription Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
2	nsv830736	chr1:98488491-98663726	Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases
3	nsv823631	chr1:98554257-98687985	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv462583	chr1:98554409-98645213	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv546875	chr1:98554409-98645213	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv1007861	chr1:98601247-98632963	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:98609400-98615200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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