Variant report

Variant	rs35543678
Chromosome Location	chr13:53000304-53000305
allele	-/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:52993615..52996128-chr13:52998035..53000509,2	K562	blood:

Extended variants
information (count: 7 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv934070	chr13:52362588-53174923	Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Active TSS Enhancers Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	59 gene(s)	inside rSNPs	diseases
2	nsv1040931	chr13:52564792-53350914	Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
3	nsv541773	chr13:52564792-53350914	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
4	nsv428288	chr13:52728370-53068132	Weak transcription Active TSS Enhancers Strong transcription Bivalent Enhancer Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
5	nsv900084	chr13:52835231-53119704	Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Strong transcription Enhancers Bivalent Enhancer Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
6	esv1838257	chr13:52971893-53231454	Flanking Active TSS Strong transcription Weak transcription Enhancers Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
7	esv3434605	chr13:52999509-53034851	Strong transcription Flanking Active TSS Active TSS Weak transcription Enhancers Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	22 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:52980200-53002000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
2	chr13:52980200-53021600	Weak transcription	Small Intestine	intestine
3	chr13:52981000-53022800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr13:52982800-53012600	Weak transcription	Fetal Brain Male	brain
5	chr13:52983600-53000800	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
6	chr13:52983800-53016600	Strong transcription	Primary monocytes fromperipheralblood	blood
7	chr13:52984000-53002400	Weak transcription	Hela-S3	cervix
8	chr13:52984400-53023400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
9	chr13:52984800-53013400	Strong transcription	Dnd41	blood
10	chr13:52985000-53000600	Strong transcription	Duodenum Smooth Muscle	Duodenum
11	chr13:52985000-53001400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr13:52985000-53002400	Weak transcription	K562	blood
13	chr13:52985000-53013400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr13:52985000-53017400	Strong transcription	Monocytes-CD14+_RO01746	blood
15	chr13:52985000-53019400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
16	chr13:52985600-53000800	Strong transcription	Fetal Muscle Trunk	muscle
17	chr13:52985600-53004000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr13:52985600-53010600	Strong transcription	Rectal Mucosa Donor 29	rectum
19	chr13:52985800-53001400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
20	chr13:52986000-53017000	Strong transcription	Primary B cells from peripheral blood	blood
21	chr13:52986200-53001600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
22	chr13:52986600-53013400	Strong transcription	Liver	Liver
23	chr13:52986800-53002400	Weak transcription	Stomach Mucosa	stomach
24	chr13:52987000-53004200	Strong transcription	Primary T helper cells PMA-I stimulated	--
25	chr13:52987200-53023600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
26	chr13:52988000-53001200	Strong transcription	Skeletal Muscle Female	skeletal muscle
27	chr13:52988200-53001200	Strong transcription	Stomach Smooth Muscle	stomach
28	chr13:52988400-53001400	Strong transcription	Fetal Thymus	thymus
29	chr13:52988800-53002600	Weak transcription	Psoas Muscle	Psoas
30	chr13:52988800-53010000	Weak transcription	Esophagus	oesophagus
31	chr13:52989000-53003400	Weak transcription	Gastric	stomach
32	chr13:52989000-53006000	Weak transcription	NHLF	lung
33	chr13:52989000-53015000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
34	chr13:52989000-53016200	Strong transcription	Adipose Nuclei	Adipose
35	chr13:52989000-53021600	Weak transcription	Fetal Heart	heart
36	chr13:52989000-53022800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
37	chr13:52989400-53003400	Weak transcription	Spleen	Spleen
38	chr13:52989400-53015000	Weak transcription	Lung	lung
39	chr13:52990400-53002400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
40	chr13:52990400-53003000	Weak transcription	Brain Angular Gyrus	brain
41	chr13:52990600-53001400	Strong transcription	Osteobl	bone
42	chr13:52990800-53001600	Strong transcription	Fetal Intestine Small	intestine
43	chr13:52990800-53015000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
44	chr13:52991000-53007200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
45	chr13:52991200-53001400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
46	chr13:52991200-53017000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
47	chr13:52991600-53008800	Weak transcription	Placenta Amnion	Placenta Amnion
48	chr13:52993200-53004400	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
49	chr13:52993200-53010000	Weak transcription	H9 Cell Line	embryonic stem cell
50	chr13:52993400-53001800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links