Variant report

Variant	rs35543831
Chromosome Location	chr4:47216166-47216167
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs11941884	0.92[AFR][1000 genomes]
rs16860101	0.85[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829922	chr4:47093785-47261181	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
2	nsv1009766	chr4:47155845-47277391	Enhancers Flanking Active TSS Weak transcription Active TSS	lncRNA	n/a	inside rSNPs	diseases
3	nsv998919	chr4:47207023-47476876	Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Strong transcription Enhancers Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:47211600-47217400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr4:47211800-47216200	Weak transcription	NHLF	lung
3	chr4:47212000-47216200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr4:47212000-47216200	Weak transcription	HSMMtube	muscle
5	chr4:47213200-47216200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr4:47213200-47216200	Weak transcription	HMEC	breast
7	chr4:47213200-47216400	Weak transcription	HSMM	muscle
8	chr4:47214200-47218400	Enhancers	NH-A	brain
9	chr4:47214400-47216200	Enhancers	Placenta Amnion	Placenta Amnion
10	chr4:47214600-47226600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr4:47215000-47216200	Enhancers	Osteobl	bone
12	chr4:47215000-47216600	Enhancers	Brain Inferior Temporal Lobe	brain
13	chr4:47215000-47218400	Enhancers	Muscle Satellite Cultured Cells	--
14	chr4:47215200-47216200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr4:47215200-47216600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr4:47215400-47216200	Active TSS	Brain Substantia Nigra	brain
17	chr4:47215400-47216600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr4:47215600-47216400	Enhancers	Fetal Heart	heart
19	chr4:47215600-47217200	Enhancers	Cortex derived primary cultured neurospheres	brain
20	chr4:47215800-47216200	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
21	chr4:47215800-47216400	Enhancers	Brain Germinal Matrix	brain
22	chr4:47215800-47216400	Active TSS	Brain Hippocampus Middle	brain
23	chr4:47215800-47216600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr4:47215800-47217400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
25	chr4:47216000-47216200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
26	chr4:47216000-47216200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
27	chr4:47216000-47216200	Flanking Active TSS	Brain Angular Gyrus	brain
28	chr4:47216000-47216400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
29	chr4:47216000-47216400	Flanking Active TSS	Brain Anterior Caudate	brain
30	chr4:47216000-47216400	Flanking Active TSS	Brain Cingulate Gyrus	brain
31	chr4:47216000-47216400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
32	chr4:47216000-47216600	Enhancers	NHEK	skin

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