Variant report

Variant	rs35548725
Chromosome Location	chr7:140015330-140015331
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:140004434..140006473-chr7:140014636..140016485,2	MCF-7	breast:
2	chr7:140014544..140017368-chr7:140028842..140031384,2	MCF-7	breast:
3	chr7:139873831..139877475-chr7:140012242..140019161,9	MCF-7	breast:
4	chr7:140014746..140017090-chr7:140018395..140020879,3	K562	blood:
5	chr7:140003129..140009929-chr7:140011645..140017997,10	MCF-7	breast:
6	chr7:139874735..139878684-chr7:140013731..140018103,7	MCF-7	breast:
7	chr7:140015118..140018618-chr7:140021344..140024336,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000260231	Chromatin interaction
ENSG00000006459	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs10952635	0.80[ASN][1000 genomes]
rs12703744	0.80[ASN][1000 genomes]
rs4518577	0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv889247	chr7:139855216-140033631	Weak transcription Flanking Active TSS Active TSS Enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv1026255	chr7:139944473-140043299	Flanking Active TSS Enhancers Weak transcription Bivalent/Poised TSS Strong transcription Genic enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:63 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:140004600-140015400	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr7:140006000-140015400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr7:140011600-140015600	Weak transcription	NHDF-Ad	bronchial
4	chr7:140011600-140016400	Enhancers	Primary B cells from cord blood	blood
5	chr7:140013200-140015600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr7:140013200-140017800	Weak transcription	Primary hematopoietic stem cells	blood
7	chr7:140013600-140018600	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
8	chr7:140013800-140015400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr7:140013800-140015600	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
10	chr7:140013800-140016800	Enhancers	Liver	Liver
11	chr7:140014000-140015800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr7:140014000-140016000	Flanking Active TSS	HepG2	liver
13	chr7:140014400-140015400	Flanking Active TSS	Breast Myoepithelial Primary Cells	Breast
14	chr7:140014400-140015600	Enhancers	A549	lung
15	chr7:140014400-140015800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr7:140014400-140015800	Enhancers	Lung	lung
17	chr7:140014400-140016000	Flanking Active TSS	Colon Smooth Muscle	Colon
18	chr7:140014600-140015400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
19	chr7:140014600-140015600	Enhancers	Duodenum Mucosa	Duodenum
20	chr7:140014600-140015800	Enhancers	Brain Angular Gyrus	brain
21	chr7:140014600-140016400	Flanking Active TSS	HMEC	breast
22	chr7:140014600-140016600	Flanking Active TSS	Stomach Smooth Muscle	stomach
23	chr7:140014600-140016800	Enhancers	Fetal Stomach	stomach
24	chr7:140014600-140017000	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr7:140014800-140015400	Active TSS	Ovary	ovary
26	chr7:140014800-140015400	Enhancers	Stomach Mucosa	stomach
27	chr7:140014800-140015600	Enhancers	Adipose Nuclei	Adipose
28	chr7:140014800-140015800	Enhancers	Osteobl	bone
29	chr7:140014800-140016600	Flanking Active TSS	Rectal Smooth Muscle	rectum
30	chr7:140014800-140017200	Enhancers	Fetal Brain Male	brain
31	chr7:140015000-140015400	Flanking Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
32	chr7:140015000-140015400	Enhancers	Rectal Mucosa Donor 31	rectum
33	chr7:140015000-140015400	Enhancers	Right Atrium	heart
34	chr7:140015000-140015600	Enhancers	Brain Substantia Nigra	brain
35	chr7:140015000-140015800	Enhancers	Esophagus	oesophagus
36	chr7:140015000-140015800	Active TSS	Rectal Mucosa Donor 29	rectum
37	chr7:140015000-140016000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
38	chr7:140015000-140016000	Enhancers	Gastric	stomach
39	chr7:140015000-140016200	Enhancers	Spleen	Spleen
40	chr7:140015000-140016400	Flanking Active TSS	Primary monocytes fromperipheralblood	blood
41	chr7:140015000-140016400	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
42	chr7:140015000-140016400	Enhancers	Placenta	Placenta
43	chr7:140015000-140016600	Flanking Active TSS	Brain Hippocampus Middle	brain
44	chr7:140015000-140016800	Enhancers	Small Intestine	intestine
45	chr7:140015000-140017000	Enhancers	Cortex derived primary cultured neurospheres	brain
46	chr7:140015000-140017000	Flanking Active TSS	Brain Anterior Caudate	brain
47	chr7:140015000-140017000	Enhancers	Placenta Amnion	Placenta Amnion
48	chr7:140015200-140015400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
49	chr7:140015200-140015400	Active TSS	Duodenum Smooth Muscle	Duodenum
50	chr7:140015200-140015400	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle

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