Variant report

Variant	rs35554395
Chromosome Location	chr5:105339812-105339813
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs12186935	0.83[EUR][1000 genomes]
rs12187242	0.83[EUR][1000 genomes]
rs12189293	0.82[EUR][1000 genomes]
rs13180897	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs13182442	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs34051684	0.80[AMR][1000 genomes]
rs34228738	0.83[EUR][1000 genomes]
rs34388646	0.83[EUR][1000 genomes]
rs34394847	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs34603891	0.82[EUR][1000 genomes]
rs35512020	0.83[EUR][1000 genomes]
rs4957581	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4957840	0.83[EUR][1000 genomes]
rs58021290	0.83[EUR][1000 genomes]
rs71592317	0.80[AMR][1000 genomes]
rs71592319	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs71592320	0.83[EUR][1000 genomes]
rs71592321	0.83[EUR][1000 genomes]
rs71592322	0.83[EUR][1000 genomes]
rs71592323	0.83[EUR][1000 genomes]
rs71592324	0.84[EUR][1000 genomes]
rs71592326	0.83[EUR][1000 genomes]
rs748895	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs951513	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030414	chr5:104583231-105392990	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv537847	chr5:104583231-105392990	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv830436	chr5:105192270-105403753	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv882653	chr5:105272932-105527995	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv1020845	chr5:105293909-105419788	Weak transcription Enhancers ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv882654	chr5:105297529-105453357	Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv882655	chr5:105308346-105663646	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
8	nsv882656	chr5:105326521-105453357	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
9	nsv882657	chr5:105326521-105507543	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
10	nsv830438	chr5:105336390-105498691	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:105339800-105340600	Enhancers	iPS-15b Cell Line	embryonic stem cell
2	chr5:105339800-105341000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links