Variant report

Variant	rs35556205
Chromosome Location	chr3:78890168-78890169
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs1033185	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11923155	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1355983	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1487135	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs162423	0.81[ASN][1000 genomes]
rs17311036	0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17311057	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17311169	0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17376753	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1825760	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2018432	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2082973	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs331134	0.82[ASN][1000 genomes]
rs333483	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs333493	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs333506	0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs333507	0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs35077320	0.91[EUR][1000 genomes]
rs57046576	0.87[EUR][1000 genomes]
rs58611756	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs58792018	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs59263997	0.93[EUR][1000 genomes]
rs6548595	0.80[EUR][1000 genomes]
rs6548600	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs66496525	0.93[EUR][1000 genomes]
rs66528054	0.93[EUR][1000 genomes]
rs67488304	0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs67703869	0.87[EUR][1000 genomes]
rs6770452	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6805432	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72892461	0.87[EUR][1000 genomes]
rs72892501	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73113488	0.93[EUR][1000 genomes]
rs73117115	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73848602	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7610996	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7617433	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7629522	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7650002	0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1010804	chr3:78739648-79087470	Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv533681	chr3:78750924-79017336	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:78882000-78894800	Weak transcription	Fetal Intestine Small	intestine
2	chr3:78886200-78895800	Weak transcription	NHLF	lung
3	chr3:78887200-78893000	Enhancers	HepG2	liver
4	chr3:78887800-78896000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr3:78889000-78894800	Weak transcription	Fetal Lung	lung
6	chr3:78889200-78890600	Enhancers	Brain Anterior Caudate	brain
7	chr3:78889400-78890400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
8	chr3:78889400-78896000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr3:78889400-78898800	Weak transcription	Brain Inferior Temporal Lobe	brain
10	chr3:78889400-78899000	Weak transcription	Brain Hippocampus Middle	brain
11	chr3:78889600-78896200	Weak transcription	A549	lung
12	chr3:78889800-78895800	Weak transcription	Brain Substantia Nigra	brain

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