Variant report

Variant	rs35558240
Chromosome Location	chr8:103240239-103240240
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:103239162..103241164-chr8:103243127..103246074,2	K562	blood:
2	chr8:103240120..103242197-chr8:103818124..103819971,2	K562	blood:
3	chr8:103238918..103240995-chr8:103242872..103245266,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000253669	Chromatin interaction

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10505020	0.85[EUR][1000 genomes]
rs12707772	0.83[EUR][1000 genomes]
rs13249865	0.86[EUR][1000 genomes]
rs2061299	0.86[EUR][1000 genomes]
rs2293982	1.00[ASN][1000 genomes]
rs28927991	0.83[EUR][1000 genomes]
rs28999669	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1020359	chr8:103109921-103318415	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv1033829	chr8:103110057-103525696	Strong transcription Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
3	nsv1021459	chr8:103163436-103401754	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
4	nsv539701	chr8:103163436-103401754	Strong transcription Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
5	nsv1025935	chr8:103199207-103468322	Strong transcription Weak transcription Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
6	nsv1018990	chr8:103207922-103357742	Genic enhancers Strong transcription Flanking Active TSS Weak transcription Enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
7	nsv539702	chr8:103207922-103357742	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
8	nsv1028890	chr8:103207922-103401754	Weak transcription Genic enhancers Active TSS Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
9	nsv891242	chr8:103210971-103282418	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
10	nsv891243	chr8:103219629-103292724	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
11	esv1797821	chr8:103234077-103241531	Weak transcription Strong transcription ZNF genes & repeats Enhancers Genic enhancers	TF binding region Chromatin interactive region	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:103209800-103244800	Weak transcription	Stomach Mucosa	stomach
2	chr8:103215600-103248400	Weak transcription	Psoas Muscle	Psoas
3	chr8:103216200-103247400	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr8:103216400-103245200	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr8:103216400-103246600	Strong transcription	Primary neutrophils fromperipheralblood	blood
6	chr8:103217000-103248400	Weak transcription	Small Intestine	intestine
7	chr8:103217800-103246400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr8:103218000-103246200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr8:103218600-103244200	Weak transcription	Fetal Heart	heart
10	chr8:103219200-103247600	Weak transcription	Fetal Brain Male	brain
11	chr8:103220400-103248800	Weak transcription	Hela-S3	cervix
12	chr8:103222600-103246000	Strong transcription	Osteobl	bone
13	chr8:103227600-103246800	Strong transcription	Primary B cells from cord blood	blood
14	chr8:103228000-103242200	Strong transcription	HUES64 Cell Line	embryonic stem cell
15	chr8:103229600-103246800	Strong transcription	Primary hematopoietic stem cells	blood
16	chr8:103229800-103245000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
17	chr8:103230000-103242200	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr8:103231400-103240600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
19	chr8:103231600-103240400	Weak transcription	Gastric	stomach
20	chr8:103231600-103249800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
21	chr8:103232000-103242600	Weak transcription	HepG2	liver
22	chr8:103234600-103250000	Weak transcription	Placenta Amnion	Placenta Amnion
23	chr8:103234800-103240400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
24	chr8:103234800-103240600	Weak transcription	Esophagus	oesophagus
25	chr8:103234800-103242400	Weak transcription	NHLF	lung
26	chr8:103234800-103242800	Weak transcription	Brain Germinal Matrix	brain
27	chr8:103236600-103245800	Strong transcription	HSMMtube	muscle
28	chr8:103237200-103248400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
29	chr8:103237400-103242200	Weak transcription	NHDF-Ad	bronchial
30	chr8:103237400-103245400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
31	chr8:103237600-103240600	Weak transcription	HUVEC	blood vessel
32	chr8:103238200-103248800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
33	chr8:103238400-103248200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
34	chr8:103238400-103248800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
35	chr8:103239200-103240800	Strong transcription	Primary T killer memory cells from peripheral blood	blood
36	chr8:103239200-103244000	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
37	chr8:103239400-103240600	Strong transcription	Fetal Brain Female	brain
38	chr8:103239400-103241800	Strong transcription	H1 Cell Line	embryonic stem cell
39	chr8:103239400-103242200	Strong transcription	HUES48 Cell Line	embryonic stem cell
40	chr8:103239400-103242800	Strong transcription	HUES6 Cell Line	embryonic stem cell
41	chr8:103239400-103242800	Strong transcription	Primary T cells from cord blood	blood
42	chr8:103239400-103244600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
43	chr8:103239400-103246800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
44	chr8:103239600-103240800	ZNF genes & repeats	Fetal Intestine Small	intestine
45	chr8:103239600-103241000	ZNF genes & repeats	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
46	chr8:103239600-103241000	Strong transcription	iPS-15b Cell Line	embryonic stem cell
47	chr8:103239600-103241000	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
48	chr8:103239600-103241000	Strong transcription	Stomach Smooth Muscle	stomach
49	chr8:103239600-103241200	Strong transcription	Fetal Muscle Trunk	muscle
50	chr8:103239600-103241400	Strong transcription	Spleen	Spleen

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links