Variant report

Variant	rs35558826
Chromosome Location	chr4:124334420-124334421
allele	-/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1006945	chr4:124206328-124503863	Enhancers Genic enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv537240	chr4:124206328-124503863	Enhancers Bivalent/Poised TSS Active TSS Weak transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
3	esv34581	chr4:124271321-125247395	Flanking Bivalent TSS/Enh Active TSS Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
4	nsv293467	chr4:124332747-124335560	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:83 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:124321400-124337200	Weak transcription	A549	lung
2	chr4:124321800-124337400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr4:124322800-124339000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr4:124323800-124337400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr4:124323800-124339400	Weak transcription	Brain Anterior Caudate	brain
6	chr4:124324000-124339000	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr4:124324000-124339600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr4:124324400-124337200	Weak transcription	Ovary	ovary
9	chr4:124324600-124337200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr4:124324600-124337200	Weak transcription	HMEC	breast
11	chr4:124324800-124337200	Weak transcription	Placenta	Placenta
12	chr4:124326600-124336400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr4:124327000-124336800	Weak transcription	HSMM	muscle
14	chr4:124327000-124342800	Weak transcription	Right Atrium	heart
15	chr4:124328400-124335000	Weak transcription	Stomach Mucosa	stomach
16	chr4:124328400-124337400	Weak transcription	H1 Cell Line	embryonic stem cell
17	chr4:124331200-124337400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
18	chr4:124331600-124337400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
19	chr4:124332600-124336800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
20	chr4:124332600-124337000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
21	chr4:124332800-124334600	Enhancers	Breast Myoepithelial Primary Cells	Breast
22	chr4:124332800-124334600	Enhancers	Primary B cells from peripheral blood	blood
23	chr4:124332800-124334600	Enhancers	Fetal Lung	lung
24	chr4:124332800-124334600	Enhancers	Skeletal Muscle Female	skeletal muscle
25	chr4:124332800-124334800	Enhancers	Primary B cells from cord blood	blood
26	chr4:124332800-124335000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr4:124332800-124335200	Enhancers	Fetal Intestine Small	intestine
28	chr4:124332800-124335600	Enhancers	Fetal Thymus	thymus
29	chr4:124332800-124343200	Enhancers	Primary hematopoietic stem cells	blood
30	chr4:124333000-124335200	Enhancers	Liver	Liver
31	chr4:124333200-124334600	Enhancers	ES-I3 Cell Line	embryonic stem cell
32	chr4:124333200-124334800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
33	chr4:124333200-124334800	Enhancers	Thymus	Thymus
34	chr4:124333200-124335000	Enhancers	Primary hematopoietic stem cells short term culture	blood
35	chr4:124333200-124335000	Enhancers	Fetal Kidney	kidney
36	chr4:124333200-124335200	Enhancers	Primary monocytes fromperipheralblood	blood
37	chr4:124333200-124335200	Enhancers	NHLF	lung
38	chr4:124333200-124335400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
39	chr4:124333200-124335400	Enhancers	Primary T cells from cord blood	blood
40	chr4:124333200-124335400	Enhancers	Fetal Intestine Large	intestine
41	chr4:124333400-124334600	Enhancers	HUES64 Cell Line	embryonic stem cell
42	chr4:124333400-124335000	Enhancers	HUES6 Cell Line	embryonic stem cell
43	chr4:124333400-124335200	Enhancers	Monocytes-CD14+_RO01746	blood
44	chr4:124333400-124337800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
45	chr4:124333400-124339400	Weak transcription	Psoas Muscle	Psoas
46	chr4:124333600-124334600	Enhancers	Muscle Satellite Cultured Cells	--
47	chr4:124333600-124334800	Enhancers	iPS-18 Cell Line	embryonic stem cell
48	chr4:124333600-124335000	Enhancers	Duodenum Mucosa	Duodenum
49	chr4:124333600-124335200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
50	chr4:124333600-124339000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links