Variant report

Variant	rs35558907
Chromosome Location	chr21:37804669-37804670
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr21:37804649..37806977-chr21:37848671..37850557,2	K562	blood:
2	chr21:37803051..37804755-chr21:37808756..37811267,2	MCF-7	breast:
3	chr21:37804552..37806868-chr21:37811840..37814057,2	K562	blood:
4	chr21:37804552..37806156-chr21:37812557..37815160,2	K562	blood:

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs1994460	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2835350	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55671293	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55933349	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60419768	1.00[EUR][1000 genomes]
rs60482546	0.89[EUR][1000 genomes]
rs60581192	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73902514	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73902521	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs73902525	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv33578	chr21:37488312-37819627	Flanking Active TSS Weak transcription Active TSS Enhancers Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
2	nsv1064194	chr21:37782214-37819820	Flanking Active TSS Strong transcription Weak transcription Enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:42 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:37790800-37806600	Weak transcription	HUES64 Cell Line	embryonic stem cell
2	chr21:37800800-37806200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr21:37802000-37805000	Weak transcription	Lung	lung
4	chr21:37802400-37809800	Weak transcription	Pancreas	Pancrea
5	chr21:37802800-37804800	Weak transcription	HepG2	liver
6	chr21:37802800-37806600	Weak transcription	Fetal Heart	heart
7	chr21:37802800-37810200	Weak transcription	Right Atrium	heart
8	chr21:37803200-37806600	Weak transcription	HUES6 Cell Line	embryonic stem cell
9	chr21:37803200-37808200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr21:37803400-37808000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr21:37803400-37810000	Weak transcription	Psoas Muscle	Psoas
12	chr21:37803400-37810200	Weak transcription	Ovary	ovary
13	chr21:37803600-37805200	Weak transcription	NHDF-Ad	bronchial
14	chr21:37803800-37805200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr21:37803800-37805200	Weak transcription	NHEK	skin
16	chr21:37803800-37805800	Weak transcription	GM12878-XiMat	blood
17	chr21:37803800-37806000	Weak transcription	Monocytes-CD14+_RO01746	blood
18	chr21:37803800-37806400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr21:37803800-37806400	Weak transcription	Esophagus	oesophagus
20	chr21:37803800-37806400	Weak transcription	HMEC	breast
21	chr21:37803800-37806600	Weak transcription	NH-A	brain
22	chr21:37803800-37809400	Weak transcription	Osteobl	bone
23	chr21:37803800-37809800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
24	chr21:37803800-37810200	Weak transcription	HSMM	muscle
25	chr21:37803800-37811800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
26	chr21:37803800-37814200	Weak transcription	Gastric	stomach
27	chr21:37803800-37818600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
28	chr21:37804000-37805400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
29	chr21:37804000-37806000	Weak transcription	Placenta Amnion	Placenta Amnion
30	chr21:37804000-37809400	Weak transcription	NHLF	lung
31	chr21:37804000-37831600	Weak transcription	Skeletal Muscle Female	skeletal muscle
32	chr21:37804000-37831600	Weak transcription	HSMMtube	muscle
33	chr21:37804200-37805000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
34	chr21:37804200-37809600	Weak transcription	Muscle Satellite Cultured Cells	--
35	chr21:37804400-37805400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
36	chr21:37804400-37807400	Enhancers	A549	lung
37	chr21:37804400-37807400	Genic enhancers	HUVEC	blood vessel
38	chr21:37804400-37809200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
39	chr21:37804400-37809800	Weak transcription	Primary hematopoietic stem cells	blood
40	chr21:37804400-37809800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
41	chr21:37804600-37805200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
42	chr21:37804600-37805600	Enhancers	Fetal Adrenal Gland	Adrenal Gland

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