Variant report

Variant	rs35570180
Chromosome Location	chr3:136448111-136448112
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:136447920..136449484-chr3:136469466..136471753,2	K562	blood:
2	chr3:136447967..136449476-chr3:136469163..136470945,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000118007	Chromatin interaction
ENSG00000261758	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs13063490	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35611305	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35824564	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35864628	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877529	chr3:136364511-136487559	ZNF genes & repeats Flanking Active TSS Weak transcription Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:114 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:136426600-136453400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr3:136427800-136452400	Weak transcription	HUVEC	blood vessel
3	chr3:136431000-136454600	Weak transcription	Hela-S3	cervix
4	chr3:136432400-136468200	Weak transcription	Aorta	Aorta
5	chr3:136432600-136454000	Weak transcription	Fetal Muscle Leg	muscle
6	chr3:136433200-136462600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr3:136438000-136458000	Weak transcription	Esophagus	oesophagus
8	chr3:136438800-136461200	Weak transcription	Fetal Muscle Trunk	muscle
9	chr3:136439200-136454400	Weak transcription	Fetal Stomach	stomach
10	chr3:136443600-136448400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
11	chr3:136443600-136451400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
12	chr3:136443800-136452600	Enhancers	Primary T helper cells fromperipheralblood	blood
13	chr3:136444000-136448800	Enhancers	Primary T cells from cord blood	blood
14	chr3:136444000-136455000	Enhancers	Primary T helper cells PMA-I stimulated	--
15	chr3:136444200-136448200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
16	chr3:136444200-136455000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
17	chr3:136444400-136451000	Enhancers	Primary T killer memory cells from peripheral blood	blood
18	chr3:136444400-136451800	Enhancers	Primary T helper naive cells from peripheral blood	blood
19	chr3:136444600-136448800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
20	chr3:136444600-136451200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
21	chr3:136444800-136450600	Enhancers	Small Intestine	intestine
22	chr3:136445200-136449200	Weak transcription	Fetal Intestine Small	intestine
23	chr3:136445200-136449400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
24	chr3:136445200-136449400	Weak transcription	A549	lung
25	chr3:136445200-136450000	Weak transcription	Primary monocytes fromperipheralblood	blood
26	chr3:136445200-136453400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
27	chr3:136445400-136460000	Weak transcription	Gastric	stomach
28	chr3:136445600-136448800	Weak transcription	Pancreas	Pancrea
29	chr3:136445800-136448800	Weak transcription	Spleen	Spleen
30	chr3:136445800-136449200	Weak transcription	Stomach Mucosa	stomach
31	chr3:136445800-136449800	Weak transcription	Right Ventricle	heart
32	chr3:136446200-136449400	Weak transcription	Duodenum Smooth Muscle	Duodenum
33	chr3:136446200-136449800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
34	chr3:136446200-136449800	Weak transcription	Psoas Muscle	Psoas
35	chr3:136446400-136453600	Weak transcription	Fetal Heart	heart
36	chr3:136446400-136460000	Weak transcription	K562	blood
37	chr3:136446600-136448400	Enhancers	GM12878-XiMat	blood
38	chr3:136446600-136449600	Weak transcription	Thymus	Thymus
39	chr3:136446600-136450200	Weak transcription	Primary B cells from cord blood	blood
40	chr3:136446600-136451800	Enhancers	Sigmoid Colon	Sigmoid Colon
41	chr3:136447000-136448400	Enhancers	Primary T regulatory cells fromperipheralblood	blood
42	chr3:136447200-136448200	Enhancers	HUES48 Cell Line	embryonic stem cell
43	chr3:136447200-136448200	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
44	chr3:136447200-136448200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
45	chr3:136447200-136448200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
46	chr3:136447200-136448200	Enhancers	Monocytes-CD14+_RO01746	blood
47	chr3:136447200-136448400	Enhancers	Rectal Mucosa Donor 29	rectum
48	chr3:136447200-136449200	Weak transcription	Duodenum Mucosa	Duodenum
49	chr3:136447400-136448200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
50	chr3:136447400-136448200	Enhancers	iPS-15b Cell Line	embryonic stem cell

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