Variant report

Variant	rs35571578
Chromosome Location	chr2:184531230-184531231
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10166958	0.80[EUR][1000 genomes]
rs13388851	0.82[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs1406337	0.86[ASN][1000 genomes]
rs34961489	0.86[ASN][1000 genomes]
rs35449477	0.86[ASN][1000 genomes]
rs35946288	0.80[EUR][1000 genomes]
rs7570041	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1012672	chr2:184363204-184571778	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	esv2757843	chr2:184368473-184558908	Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	esv2759105	chr2:184368473-184558908	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv428729	chr2:184368473-184558908	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv583952	chr2:184495927-184594404	Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv869960	chr2:184502527-184639318	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv1010253	chr2:184508963-184573763	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:184529800-184531400	Enhancers	HUES64 Cell Line	embryonic stem cell
2	chr2:184529800-184531800	Enhancers	iPS-20b Cell Line	embryonic stem cell
3	chr2:184529800-184531800	Enhancers	Cortex derived primary cultured neurospheres	brain
4	chr2:184530000-184531800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr2:184530200-184531600	Enhancers	Brain Anterior Caudate	brain
6	chr2:184530200-184531800	Enhancers	ES-I3 Cell Line	embryonic stem cell
7	chr2:184530200-184531800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr2:184530200-184531800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr2:184530400-184531800	Enhancers	HSMMtube	muscle
10	chr2:184530800-184531800	Enhancers	Skeletal Muscle Male	skeletal muscle
11	chr2:184530800-184531800	Enhancers	Skeletal Muscle Female	skeletal muscle
12	chr2:184530800-184532800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
13	chr2:184531200-184533000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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