Variant report

Variant	rs35572010
Chromosome Location	chr3:24173455-24173456
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:24170949..24173719-chr3:24175098..24176977,4	K562	blood:
2	chr3:24171878..24173570-chr3:24173674..24175384,2	MCF-7	breast:
3	chr3:24171147..24173719-chr3:24174806..24177667,3	K562	blood:

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs1667765	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs826376	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs826377	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs826380	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533980	chr3:23445901-24311972	ZNF genes & repeats Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
2	nsv834639	chr3:24037113-24233925	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:54 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:24156400-24187800	Weak transcription	Brain Inferior Temporal Lobe	brain
2	chr3:24161200-24176400	Weak transcription	Pancreas	Pancrea
3	chr3:24162800-24178200	Weak transcription	Spleen	Spleen
4	chr3:24165800-24179000	Weak transcription	Duodenum Mucosa	Duodenum
5	chr3:24167000-24197800	Weak transcription	K562	blood
6	chr3:24167800-24187800	Weak transcription	Small Intestine	intestine
7	chr3:24168600-24179200	Weak transcription	Sigmoid Colon	Sigmoid Colon
8	chr3:24168800-24181200	Weak transcription	Brain Angular Gyrus	brain
9	chr3:24169000-24187800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
10	chr3:24169400-24174200	Weak transcription	Rectal Mucosa Donor 31	rectum
11	chr3:24169800-24186200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr3:24170000-24176000	Weak transcription	Lung	lung
13	chr3:24170000-24178200	Weak transcription	Gastric	stomach
14	chr3:24170200-24178200	Weak transcription	Stomach Mucosa	stomach
15	chr3:24170800-24184600	Weak transcription	Brain Anterior Caudate	brain
16	chr3:24171000-24176400	Strong transcription	Liver	Liver
17	chr3:24171000-24177400	Strong transcription	Fetal Intestine Small	intestine
18	chr3:24171000-24178200	Weak transcription	Muscle Satellite Cultured Cells	--
19	chr3:24171200-24176400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr3:24171200-24176400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr3:24171200-24176800	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
22	chr3:24171400-24174400	Strong transcription	Fetal Stomach	stomach
23	chr3:24171400-24174400	Strong transcription	Rectal Mucosa Donor 29	rectum
24	chr3:24171400-24186200	Strong transcription	Fetal Intestine Large	intestine
25	chr3:24171600-24173600	Strong transcription	HepG2	liver
26	chr3:24171600-24175200	Strong transcription	Stomach Smooth Muscle	stomach
27	chr3:24171600-24176000	Strong transcription	Aorta	Aorta
28	chr3:24171600-24176400	Weak transcription	NHLF	lung
29	chr3:24171600-24176600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
30	chr3:24171600-24178800	Weak transcription	HMEC	breast
31	chr3:24171600-24179200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
32	chr3:24172000-24178200	Weak transcription	Psoas Muscle	Psoas
33	chr3:24172200-24176000	Strong transcription	Adipose Nuclei	Adipose
34	chr3:24172400-24173800	Strong transcription	Fetal Lung	lung
35	chr3:24172600-24176600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
36	chr3:24172800-24174200	Strong transcription	Colon Smooth Muscle	Colon
37	chr3:24172800-24174800	Strong transcription	Skeletal Muscle Male	skeletal muscle
38	chr3:24173000-24173600	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
39	chr3:24173000-24173600	ZNF genes & repeats	Primary hematopoietic stem cells	blood
40	chr3:24173000-24173600	ZNF genes & repeats	Esophagus	oesophagus
41	chr3:24173000-24173600	Strong transcription	Rectal Smooth Muscle	rectum
42	chr3:24173000-24173800	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
43	chr3:24173000-24174000	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
44	chr3:24173000-24174200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
45	chr3:24173000-24174200	Strong transcription	Duodenum Smooth Muscle	Duodenum
46	chr3:24173000-24174400	Strong transcription	Left Ventricle	heart
47	chr3:24173000-24174600	Strong transcription	Placenta Amnion	Placenta Amnion
48	chr3:24173000-24176600	Strong transcription	Skeletal Muscle Female	skeletal muscle
49	chr3:24173000-24187400	Weak transcription	Fetal Brain Male	brain
50	chr3:24173200-24173600	ZNF genes & repeats	Placenta	Placenta

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