Variant report

Variant	rs35572694
Chromosome Location	chr10:22221179-22221180
allele	-/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	STAT3	chr10:22220861-22221279	MCF10A-Er-Src	breast:	n/a	n/a
2	POLR2A	chr10:22221052-22221219	A549	lung:	n/a	n/a
3	STAT3	chr10:22220795-22221302	MCF10A-Er-Src	breast:	n/a	n/a
4	SETDB1	chr10:22220824-22221345	U2OS	brain:	n/a	n/a
5	POLR2A	chr10:22221102-22221237	MCF-7	breast:	n/a	n/a
6	FOS	chr10:22220840-22221321	MCF10A-Er-Src	breast:	n/a	n/a
7	CEBPB	chr10:22221064-22221425	K562	blood:	n/a	n/a
8	POLR2A	chr10:22221153-22221228	MCF-7	breast:	n/a	n/a

Variant related genes	Relation type
RN7SKP37	TF binding region

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1802317	chr10:21866085-22288132	Strong transcription Enhancers Weak transcription ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	esv1793816	chr10:22088054-22285371	Strong transcription Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv1048924	chr10:22177164-22296409	Enhancers Bivalent/Poised TSS Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
4	nsv831808	chr10:22187850-22357814	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
5	nsv894948	chr10:22203392-22255097	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
6	nsv947596	chr10:22219973-22227016	Weak transcription Enhancers ZNF genes & repeats Strong transcription	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:22179000-22224000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
2	chr10:22185000-22222000	Weak transcription	Right Ventricle	heart
3	chr10:22188800-22229200	Weak transcription	Aorta	Aorta
4	chr10:22193000-22224200	Weak transcription	Primary B cells from cord blood	blood
5	chr10:22196200-22223400	Weak transcription	Primary hematopoietic stem cells	blood
6	chr10:22199600-22250800	Weak transcription	Pancreas	Pancrea
7	chr10:22203000-22221200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr10:22215600-22228600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr10:22216800-22221200	Weak transcription	Hela-S3	cervix
10	chr10:22217000-22221800	Weak transcription	NHLF	lung
11	chr10:22217200-22222200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr10:22217200-22224800	Weak transcription	Placenta	Placenta
13	chr10:22218000-22222400	Enhancers	K562	blood
14	chr10:22218200-22222600	Weak transcription	Muscle Satellite Cultured Cells	--
15	chr10:22218400-22222200	Weak transcription	Stomach Mucosa	stomach
16	chr10:22218400-22223400	Weak transcription	HMEC	breast
17	chr10:22218600-22223400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr10:22219000-22221600	Enhancers	Fetal Heart	heart
19	chr10:22219200-22222600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
20	chr10:22219200-22223400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
21	chr10:22219200-22225000	Weak transcription	Gastric	stomach
22	chr10:22221000-22221200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
23	chr10:22221000-22221600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
24	chr10:22221000-22222600	Enhancers	Left Ventricle	heart

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links