Variant report

Variant	rs35576002
Chromosome Location	chr3:150212583-150212584
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:11)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:11 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:150124942..150128625-chr3:150212182..150215161,4	MCF-7	breast:
2	chr3:150127999..150131136-chr3:150212098..150216943,5	MCF-7	breast:
3	chr3:150133801..150136735-chr3:150211220..150213846,2	MCF-7	breast:
4	chr3:150125461..150127974-chr3:150211949..150215332,4	K562	blood:
5	chr3:150151232..150153181-chr3:150211698..150213677,2	MCF-7	breast:
6	chr3:150146836..150150944-chr3:150211993..150216271,5	K562	blood:
7	chr3:150124804..150129560-chr3:150211663..150216825,11	K562	blood:
8	chr3:150124117..150127899-chr3:150211651..150217297,6	MCF-7	breast:
9	chr3:150142988..150145486-chr3:150212475..150215228,2	MCF-7	breast:
10	chr3:150128686..150130712-chr3:150211662..150215340,3	MCF-7	breast:
11	chr3:150063831..150066264-chr3:150212112..150214058,2	MCF-7	breast:

No data

No data

No data

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs13060240	0.87[AMR][1000 genomes]
rs13082401	0.87[AMR][1000 genomes]
rs4681625	0.99[ASN][1000 genomes]
rs6440681	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6766561	0.88[AMR][1000 genomes]
rs9866510	0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877645	chr3:150103135-150212698	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
2	nsv532662	chr3:150180747-150633414	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	101 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:150188200-150218800	Weak transcription	HSMM	muscle
2	chr3:150205800-150213000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr3:150208200-150212800	Weak transcription	Fetal Intestine Large	intestine
4	chr3:150210600-150218600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr3:150212200-150212600	Enhancers	iPS-15b Cell Line	embryonic stem cell
6	chr3:150212200-150212600	Enhancers	HepG2	liver
7	chr3:150212200-150213200	Enhancers	ES-I3 Cell Line	embryonic stem cell
8	chr3:150212200-150213200	Enhancers	Primary monocytes fromperipheralblood	blood
9	chr3:150212200-150213200	Enhancers	K562	blood
10	chr3:150212200-150213600	Enhancers	Monocytes-CD14+_RO01746	blood
11	chr3:150212200-150214000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr3:150212200-150214000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr3:150212400-150212600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr3:150212400-150213200	Enhancers	H9 Cell Line	embryonic stem cell
15	chr3:150212400-150213200	Enhancers	Fetal Heart	heart
16	chr3:150212400-150213200	Enhancers	A549	lung
17	chr3:150212400-150213400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
18	chr3:150212400-150213600	Enhancers	Primary hematopoietic stem cells short term culture	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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