Variant report

Variant	rs35583564
Chromosome Location	chr7:117407833-117407834
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10487375	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10953849	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10953850	0.93[EUR][1000 genomes]
rs11767812	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11974874	0.93[EUR][1000 genomes]
rs12111635	0.89[AFR][1000 genomes];0.86[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12112085	0.93[EUR][1000 genomes]
rs17140422	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs17140425	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs28537841	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs34021261	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs34061504	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs34150886	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs34276731	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs34292695	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs34298238	0.93[EUR][1000 genomes]
rs34456221	0.82[AFR][1000 genomes];0.80[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs34849507	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs34872021	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs35002306	0.93[EUR][1000 genomes]
rs35205358	0.93[EUR][1000 genomes]
rs35638149	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs35850544	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs36026875	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7777671	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7791416	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7793937	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs916931	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs929667	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]

No data

Chromatin state (count:46 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:117354800-117417200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr7:117356200-117431400	Weak transcription	HUES6 Cell Line	embryonic stem cell
3	chr7:117375000-117410800	Weak transcription	Left Ventricle	heart
4	chr7:117375200-117431600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr7:117385400-117410600	Weak transcription	Duodenum Smooth Muscle	Duodenum
6	chr7:117387400-117410400	Weak transcription	Stomach Smooth Muscle	stomach
7	chr7:117391200-117413400	Weak transcription	Pancreatic Islets	Pancreatic Islet
8	chr7:117396400-117450200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr7:117396600-117431200	Weak transcription	Aorta	Aorta
10	chr7:117396800-117421000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr7:117397000-117431200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr7:117397000-117431200	Weak transcription	Fetal Intestine Small	intestine
13	chr7:117397000-117431600	Weak transcription	Ovary	ovary
14	chr7:117397200-117421400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr7:117397200-117431200	Weak transcription	Pancreas	Pancrea
16	chr7:117398600-117431200	Weak transcription	Fetal Stomach	stomach
17	chr7:117399000-117412000	Weak transcription	NHLF	lung
18	chr7:117399400-117412000	Weak transcription	Right Atrium	heart
19	chr7:117400600-117410400	Weak transcription	Adipose Nuclei	Adipose
20	chr7:117400800-117410200	Weak transcription	Fetal Brain Female	brain
21	chr7:117400800-117431200	Weak transcription	Cortex derived primary cultured neurospheres	brain
22	chr7:117401000-117409000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
23	chr7:117401400-117434000	Weak transcription	Rectal Smooth Muscle	rectum
24	chr7:117402400-117419200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
25	chr7:117402600-117408800	Weak transcription	Fetal Heart	heart
26	chr7:117402800-117411400	Weak transcription	H9 Cell Line	embryonic stem cell
27	chr7:117403000-117410400	Weak transcription	Esophagus	oesophagus
28	chr7:117403000-117411400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
29	chr7:117404800-117409400	Strong transcription	H1 Cell Line	embryonic stem cell
30	chr7:117405000-117419600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
31	chr7:117405800-117408200	Strong transcription	Fetal Lung	lung
32	chr7:117405800-117409200	Strong transcription	HUES48 Cell Line	embryonic stem cell
33	chr7:117405800-117418400	Strong transcription	iPS-20b Cell Line	embryonic stem cell
34	chr7:117406000-117412000	Weak transcription	Fetal Brain Male	brain
35	chr7:117406600-117408200	Enhancers	Brain Angular Gyrus	brain
36	chr7:117406600-117408200	Enhancers	Brain Hippocampus Middle	brain
37	chr7:117406600-117408200	Enhancers	Brain Inferior Temporal Lobe	brain
38	chr7:117406600-117409200	Enhancers	Brain Substantia Nigra	brain
39	chr7:117406600-117409400	Strong transcription	HUES64 Cell Line	embryonic stem cell
40	chr7:117406600-117410000	Strong transcription	iPS-18 Cell Line	embryonic stem cell
41	chr7:117406800-117408200	Enhancers	Brain Cingulate Gyrus	brain
42	chr7:117407400-117408800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
43	chr7:117407400-117411000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
44	chr7:117407600-117408000	Weak transcription	Brain Germinal Matrix	brain
45	chr7:117407600-117410600	Weak transcription	Brain Anterior Caudate	brain
46	chr7:117407600-117411800	Weak transcription	Fetal Kidney	kidney

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