Variant report
Variant | rs35584719 |
---|---|
Chromosome Location | chr2:78215602-78215603 |
allele | A/G |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:1)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
(count:1 , 50 per page) page:
1
No. | Distal block | Cell Line | Cell type | Cell Stage |
---|---|---|---|---|
1 | chr2:78215424..78217099-chr2:78219299..78221415,2 | K562 | blood: |
(count:1 , 50 per page) page:
1
No. | lncRNA name | Chromosome Location | lncRNA alias |
---|---|---|---|
1 | lnc-LRRTM4-3 | chr2:78214578-78215904 | NONHSAT071835 |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs10201069 | 0.86[AMR][1000 genomes];0.93[EUR][1000 genomes] |
rs10203046 | 0.80[AMR][1000 genomes];0.93[EUR][1000 genomes] |
rs10211618 | 0.88[EUR][1000 genomes] |
rs12328912 | 0.86[AMR][1000 genomes];0.93[EUR][1000 genomes] |
rs12994759 | 1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs13001212 | 0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes] |
rs13031726 | 0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes] |
rs13032056 | 0.93[EUR][1000 genomes];0.86[ASN][1000 genomes] |
rs1527164 | 0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes] |
rs34243615 | 0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes] |
rs34283491 | 0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes] |
rs35077218 | 0.94[EUR][1000 genomes];0.86[ASN][1000 genomes] |
rs35450451 | 0.92[EUR][1000 genomes];0.86[ASN][1000 genomes] |
rs35977368 | 1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes] |
rs36084155 | 0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes] |
rs66545304 | 0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes] |
rs67082429 | 1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes] |
rs67110364 | 0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes] |
rs6712046 | 0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs67414293 | 0.94[EUR][1000 genomes];0.86[ASN][1000 genomes] |
rs6749223 | 0.92[EUR][1000 genomes];0.86[ASN][1000 genomes] |
rs71337744 | 0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes] |
rs7563309 | 0.94[EUR][1000 genomes];0.89[ASN][1000 genomes] |
rs7571316 | 0.84[AMR][1000 genomes];0.96[EUR][1000 genomes] |
rs9973347 | 0.93[EUR][1000 genomes] |
rs9973916 | 0.86[AMR][1000 genomes];0.93[EUR][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv917204 | chr2:78047538-78602013 | Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
2 | esv3329151 | chr2:78071300-78271485 | Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
3 | nsv1001461 | chr2:78091352-78673948 | Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
4 | esv2757811 | chr2:78126389-78711032 | Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
5 | esv2759068 | chr2:78126389-78711032 | Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
6 | nsv1003010 | chr2:78145703-78219800 | Active TSS Weak transcription Enhancers ZNF genes & repeats | Chromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
7 | nsv1000527 | chr2:78176225-78468796 | Enhancers Active TSS ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
8 | esv3449162 | chr2:78181346-78221434 | Weak transcription Active TSS Enhancers | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
9 | esv3404781 | chr2:78186346-78220877 | Enhancers Weak transcription Active TSS | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
10 | esv3447123 | chr2:78186346-78239095 | Weak transcription Enhancers Active TSS | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
11 | nsv524980 | chr2:78199268-78218826 | Weak transcription Enhancers | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
12 | esv2756933 | chr2:78199735-78640246 | Weak transcription Active TSS Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
No data |