Variant report

Variant	rs35587044
Chromosome Location	chr1:161141086-161141087
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:161135753..161138931-chr1:161140276..161143695,4	MCF-7	breast:
2	chr1:160990362..160992218-chr1:161140234..161141788,2	K562	blood:
3	chr1:161140934..161143021-chr1:161168677..161170502,2	MCF-7	breast:
4	chr1:161140451..161141118-chr11:22482209..22483056,2	MCF-7	breast:
5	chr1:161140294..161141982-chr1:161353302..161356192,2	K562	blood:
6	chr1:161135373..161143326-chr1:161144272..161149580,16	MCF-7	breast:

Variant related genes	Relation type
ENSG00000143224	Chromatin interaction
ENSG00000158769	Chromatin interaction
ENSG00000158864	Chromatin interaction
ENSG00000158850	Chromatin interaction
ENSG00000158859	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs12735723	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs12738103	1.00[CEU][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs12759784	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs2307426	1.00[CEU][hapmap]
rs41270007	0.90[EUR][1000 genomes]
rs41270023	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530077	chr1:160836448-161284904	Enhancers Weak transcription Strong transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	119 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:161137200-161142400	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr1:161137200-161146400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr1:161137400-161141400	Weak transcription	Small Intestine	intestine
4	chr1:161137400-161143200	Weak transcription	Right Atrium	heart
5	chr1:161137600-161145600	Strong transcription	Fetal Intestine Small	intestine
6	chr1:161137800-161142600	Strong transcription	Fetal Stomach	stomach
7	chr1:161137800-161142800	Strong transcription	Fetal Lung	lung
8	chr1:161137800-161143000	Strong transcription	Spleen	Spleen
9	chr1:161137800-161145600	Weak transcription	Fetal Brain Male	brain
10	chr1:161137800-161145600	Strong transcription	A549	lung
11	chr1:161138000-161141400	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr1:161138000-161142000	Strong transcription	Skeletal Muscle Male	skeletal muscle
13	chr1:161138000-161142600	Strong transcription	Colon Smooth Muscle	Colon
14	chr1:161138000-161142800	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr1:161138000-161143000	Strong transcription	Primary T cells fromperipheralblood	blood
16	chr1:161138000-161145400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
17	chr1:161138000-161145600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chr1:161138000-161145800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
19	chr1:161138000-161145800	Strong transcription	Brain Hippocampus Middle	brain
20	chr1:161138200-161142000	Strong transcription	Fetal Muscle Leg	muscle
21	chr1:161138200-161142400	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr1:161138200-161143400	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
23	chr1:161138200-161144000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
24	chr1:161138200-161144800	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
25	chr1:161138200-161145400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr1:161138200-161145400	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
27	chr1:161138200-161145600	Strong transcription	Primary hematopoietic stem cells	blood
28	chr1:161138200-161145600	Strong transcription	Fetal Brain Female	brain
29	chr1:161138200-161145600	Strong transcription	Monocytes-CD14+_RO01746	blood
30	chr1:161138200-161145800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
31	chr1:161138200-161145800	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
32	chr1:161138200-161145800	Strong transcription	Brain Inferior Temporal Lobe	brain
33	chr1:161138400-161145600	Strong transcription	Placenta	Placenta
34	chr1:161138400-161145800	Strong transcription	Brain Cingulate Gyrus	brain
35	chr1:161138400-161145800	Strong transcription	Brain Germinal Matrix	brain
36	chr1:161138600-161142800	Strong transcription	Brain Anterior Caudate	brain
37	chr1:161138600-161142800	Strong transcription	Duodenum Mucosa	Duodenum
38	chr1:161138600-161143400	Strong transcription	Gastric	stomach
39	chr1:161138600-161144200	Strong transcription	Primary T cells from cord blood	blood
40	chr1:161138600-161145000	Strong transcription	iPS-20b Cell Line	embryonic stem cell
41	chr1:161138600-161145600	Strong transcription	HUES64 Cell Line	embryonic stem cell
42	chr1:161138600-161145600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
43	chr1:161138600-161145600	Strong transcription	Fetal Thymus	thymus
44	chr1:161138600-161145800	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
45	chr1:161138600-161145800	Strong transcription	Fetal Intestine Large	intestine
46	chr1:161138600-161145800	Strong transcription	HepG2	liver
47	chr1:161138800-161141800	Strong transcription	Adipose Nuclei	Adipose
48	chr1:161138800-161141800	Strong transcription	NHLF	lung
49	chr1:161138800-161142000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
50	chr1:161138800-161142200	Strong transcription	Colonic Mucosa	Colon

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