Variant report

Variant	rs35587360
Chromosome Location	chr2:10734746-10734747
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:10732866..10735426-chr2:10759991..10761967,2	MCF-7	breast:
2	chr2:10734697..10736595-chr2:10738391..10740909,2	MCF-7	breast:
3	chr2:10724831..10728793-chr2:10731457..10735556,4	MCF-7	breast:

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10490187	0.86[ASN][1000 genomes]
rs12474784	0.83[EUR][1000 genomes]
rs13019722	0.83[ASN][1000 genomes]
rs35364825	0.87[ASN][1000 genomes]
rs3732111	0.82[ASN][1000 genomes]
rs3815520	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3821195	0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4669597	0.87[ASN][1000 genomes]
rs62127196	0.85[ASN][1000 genomes]
rs62127226	0.81[EUR][1000 genomes]
rs62128614	0.83[EUR][1000 genomes]
rs6744848	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7594805	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7594816	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1007185	chr2:10540386-10791743	Weak transcription Genic enhancers Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
2	nsv833370	chr2:10625149-10785402	Enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	nsv1009897	chr2:10627248-10751468	Enhancers Strong transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
4	nsv1000953	chr2:10717304-10921805	Strong transcription Enhancers Active TSS Bivalent Enhancer Genic enhancers Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
5	nsv535584	chr2:10717304-10921805	Bivalent Enhancer Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
6	nsv833381	chr2:10723465-10911284	Strong transcription Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers Enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:10698600-10736600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr2:10705800-10736000	Strong transcription	Duodenum Mucosa	Duodenum
3	chr2:10709200-10746800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr2:10712600-10742000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
5	chr2:10719800-10746600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
6	chr2:10720000-10746400	Strong transcription	Dnd41	blood
7	chr2:10720400-10740200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr2:10720800-10739200	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
9	chr2:10721000-10755000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
10	chr2:10721200-10746800	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
11	chr2:10721400-10735800	Strong transcription	Primary T cells from cord blood	blood
12	chr2:10721600-10735600	Strong transcription	Primary T helper cells PMA-I stimulated	--
13	chr2:10722000-10735200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
14	chr2:10722000-10738200	Strong transcription	Fetal Muscle Leg	muscle
15	chr2:10722400-10734800	Strong transcription	Primary T cells fromperipheralblood	blood
16	chr2:10722400-10735200	Strong transcription	Primary T helper cells fromperipheralblood	blood
17	chr2:10722800-10741400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr2:10724000-10735600	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
19	chr2:10725600-10744000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr2:10725600-10758800	Weak transcription	Stomach Mucosa	stomach
21	chr2:10725600-10793400	Weak transcription	Pancreatic Islets	Pancreatic Islet
22	chr2:10725800-10787000	Weak transcription	Fetal Heart	heart
23	chr2:10726000-10738400	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr2:10726000-10746200	Weak transcription	Placenta Amnion	Placenta Amnion
25	chr2:10726000-10747600	Strong transcription	HepG2	liver
26	chr2:10727400-10736200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
27	chr2:10727600-10737000	Strong transcription	Fetal Intestine Small	intestine
28	chr2:10727600-10739400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
29	chr2:10727800-10735000	Strong transcription	Adipose Nuclei	Adipose
30	chr2:10727800-10740400	Strong transcription	Primary B cells from peripheral blood	blood
31	chr2:10728200-10737800	Weak transcription	NH-A	brain
32	chr2:10728400-10736000	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
33	chr2:10729200-10738000	Weak transcription	HMEC	breast
34	chr2:10729200-10741600	Weak transcription	Pancreas	Pancrea
35	chr2:10729200-10754200	Weak transcription	NHLF	lung
36	chr2:10729200-10760000	Weak transcription	Brain Angular Gyrus	brain
37	chr2:10729400-10736600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
38	chr2:10729400-10740800	Weak transcription	Primary neutrophils fromperipheralblood	blood
39	chr2:10729400-10741600	Weak transcription	Right Ventricle	heart
40	chr2:10729400-10781800	Weak transcription	Brain Inferior Temporal Lobe	brain
41	chr2:10729400-10798400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
42	chr2:10729600-10736000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
43	chr2:10729600-10736200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
44	chr2:10729600-10738000	Weak transcription	Small Intestine	intestine
45	chr2:10729600-10741400	Weak transcription	Colonic Mucosa	Colon
46	chr2:10729600-10741400	Weak transcription	Spleen	Spleen
47	chr2:10729600-10742000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
48	chr2:10729800-10736600	Weak transcription	H1 Cell Line	embryonic stem cell
49	chr2:10729800-10738000	Weak transcription	Fetal Kidney	kidney
50	chr2:10729800-10744800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links