Variant report

Variant	rs35589225
Chromosome Location	chr2:190801570-190801571
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs11901349	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1377891	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2060999	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2168059	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4144049	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6434372	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6434373	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6434374	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6717085	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs71434672	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv875618	chr2:190789387-190883360	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:190800800-190802200	Weak transcription	HSMM	muscle
2	chr2:190800800-190804400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr2:190801400-190805400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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