Variant report

Variant	rs35589902
Chromosome Location	chr6:132652119-132652120
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:132651937..132652448-chr8:134519934..134520831,2	MCF-7	breast:

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs11965875	0.96[EUR][1000 genomes]
rs11968833	0.81[AFR][1000 genomes]
rs34906732	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886674	chr6:132613798-132694751	ZNF genes & repeats Flanking Active TSS Weak transcription Enhancers Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region Chromatin interactive region miRNA target site	5 gene(s)	inside rSNPs	diseases
2	nsv830811	chr6:132623160-132787539	Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:132635600-132655000	Weak transcription	NH-A	brain
2	chr6:132637000-132652800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr6:132638800-132654800	Weak transcription	Fetal Kidney	kidney
4	chr6:132640400-132662200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr6:132644000-132657400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr6:132644400-132675400	Weak transcription	Fetal Lung	lung
7	chr6:132645000-132655000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr6:132648200-132654800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr6:132649800-132652400	Weak transcription	NHDF-Ad	bronchial
10	chr6:132651000-132653200	Enhancers	Placenta	Placenta
11	chr6:132651000-132655000	Weak transcription	Fetal Intestine Small	intestine
12	chr6:132651200-132653200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr6:132651400-132652400	Weak transcription	Placenta Amnion	Placenta Amnion
14	chr6:132651600-132652800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr6:132651600-132652800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr6:132651600-132653000	Enhancers	NHEK	skin
17	chr6:132651800-132652600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr6:132651800-132652600	Enhancers	HMEC	breast
19	chr6:132652000-132652200	Enhancers	Primary T cells from cord blood	blood
20	chr6:132652000-132652400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
21	chr6:132652000-132652600	Enhancers	A549	lung
22	chr6:132652000-132652800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
23	chr6:132652000-132654800	Weak transcription	Cortex derived primary cultured neurospheres	brain
24	chr6:132652000-132665600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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