Variant report

Variant	rs35591293
Chromosome Location	chr1:114496243-114496244
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:114469554..114476691-chr1:114493097..114498363,7	MCF-7	breast:
2	chr1:114446008..114448199-chr1:114495493..114497584,2	MCF-7	breast:
3	chr1:114492678..114494390-chr1:114495049..114496552,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000235527	Chromatin interaction
ENSG00000134262	Chromatin interaction
ENSG00000163349	Chromatin interaction
ENSG00000118655	Chromatin interaction

Extended variants
information (count: 2 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs11580207	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2752424	chr1:114189958-114712958	Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	96 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:114473600-114499200	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr1:114479000-114517600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr1:114484000-114510400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr1:114484000-114510400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr1:114484000-114511200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr1:114484200-114497800	Weak transcription	NHDF-Ad	bronchial
7	chr1:114484200-114499400	Weak transcription	Brain Germinal Matrix	brain
8	chr1:114484200-114499600	Weak transcription	HMEC	breast
9	chr1:114484200-114504800	Weak transcription	Esophagus	oesophagus
10	chr1:114484200-114505600	Weak transcription	H9 Cell Line	embryonic stem cell
11	chr1:114484400-114510400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr1:114484600-114496400	Weak transcription	NHEK	skin
13	chr1:114485000-114496400	Weak transcription	Fetal Muscle Trunk	muscle
14	chr1:114485000-114500600	Weak transcription	Lung	lung
15	chr1:114485000-114510400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr1:114486400-114497200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
17	chr1:114486400-114499800	Weak transcription	Fetal Brain Male	brain
18	chr1:114486600-114496400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr1:114486600-114496400	Weak transcription	Placenta	Placenta
20	chr1:114486600-114497400	Weak transcription	Fetal Kidney	kidney
21	chr1:114487800-114498800	Weak transcription	Left Ventricle	heart
22	chr1:114487800-114499200	Weak transcription	Ovary	ovary
23	chr1:114488000-114496600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
24	chr1:114488200-114499000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
25	chr1:114489600-114499800	Weak transcription	Fetal Brain Female	brain
26	chr1:114489600-114505800	Weak transcription	Gastric	stomach
27	chr1:114489800-114496400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
28	chr1:114489800-114496800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
29	chr1:114489800-114497200	Weak transcription	Osteobl	bone
30	chr1:114489800-114510400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
31	chr1:114490000-114496400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
32	chr1:114490000-114496400	Weak transcription	Fetal Muscle Leg	muscle
33	chr1:114490000-114496800	Weak transcription	HSMM	muscle
34	chr1:114490000-114496800	Weak transcription	HSMMtube	muscle
35	chr1:114490000-114497200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
36	chr1:114490000-114499400	Weak transcription	NHLF	lung
37	chr1:114490000-114500600	Weak transcription	Pancreas	Pancrea
38	chr1:114490000-114505600	Weak transcription	Aorta	Aorta
39	chr1:114490200-114496600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
40	chr1:114490200-114499200	Weak transcription	H1 Cell Line	embryonic stem cell
41	chr1:114490200-114507200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
42	chr1:114490200-114510800	Weak transcription	A549	lung
43	chr1:114490400-114496600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
44	chr1:114490400-114497800	Weak transcription	NH-A	brain
45	chr1:114490400-114499200	Weak transcription	Stomach Mucosa	stomach
46	chr1:114490400-114505000	Weak transcription	Cortex derived primary cultured neurospheres	brain
47	chr1:114490600-114496800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
48	chr1:114490600-114497600	Weak transcription	Hela-S3	cervix
49	chr1:114490600-114499200	Weak transcription	Brain Anterior Caudate	brain
50	chr1:114490600-114499400	Weak transcription	Right Ventricle	heart

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links