Variant report

Variant	rs35599999
Chromosome Location	chr8:131497209-131497210
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs4316172	0.88[EUR][1000 genomes]
rs4319114	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4404934	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs4495444	0.84[EUR][1000 genomes]
rs4504653	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4629883	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869334	chr8:131025093-131651487	Weak transcription Enhancers Genic enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	nsv915580	chr8:131025093-131667578	Weak transcription Genic enhancers Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
3	nsv533085	chr8:131042781-131755007	Strong transcription Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:131491400-131498000	Weak transcription	Lung	lung
2	chr8:131492800-131498000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr8:131494200-131500400	Enhancers	Placenta	Placenta
4	chr8:131495000-131498000	Enhancers	NHEK	skin
5	chr8:131495200-131497600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr8:131495400-131497800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr8:131495800-131497400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr8:131496400-131497800	Weak transcription	Osteobl	bone
9	chr8:131496400-131498200	Weak transcription	Fetal Intestine Large	intestine
10	chr8:131496400-131500000	Enhancers	A549	lung
11	chr8:131496600-131503000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr8:131496600-131503200	Weak transcription	HMEC	breast
13	chr8:131496600-131503600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr8:131496800-131497800	Weak transcription	Placenta Amnion	Placenta Amnion
15	chr8:131497000-131497400	ZNF genes & repeats	Fetal Intestine Small	intestine
16	chr8:131497000-131501400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
17	chr8:131497200-131498200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
18	chr8:131497200-131503600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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