Variant report

Variant	rs35607976
Chromosome Location	chr15:31277788-31277789
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:31276854..31278863-chr15:31283840..31285876,2	MCF-7	breast:
2	chr15:31269600..31272390-chr15:31276376..31278340,2	K562	blood:

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs11634216	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11634761	0.83[EUR][1000 genomes]
rs11638409	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11639169	0.80[EUR][1000 genomes]
rs12906054	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1425292	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1474380	0.86[EUR][1000 genomes]
rs17227989	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2140734	0.85[EUR][1000 genomes]
rs34095794	0.86[EUR][1000 genomes]
rs34294266	0.81[EUR][1000 genomes]
rs34331396	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs34693097	0.85[EUR][1000 genomes]
rs35239376	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs35396566	0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35784593	0.87[EUR][1000 genomes]
rs35811129	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs3817498	0.81[EUR][1000 genomes]
rs4559875	0.80[EUR][1000 genomes]
rs61997076	0.88[AMR][1000 genomes]
rs61997138	0.87[EUR][1000 genomes]
rs61997139	0.86[EUR][1000 genomes]
rs61997140	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs61997142	0.98[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7176569	0.82[EUR][1000 genomes]
rs8031584	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs8032942	0.80[EUR][1000 genomes]
rs890159	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:14 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531138	chr15:30653877-31609679	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	96 gene(s)	inside rSNPs	diseases
2	nsv916936	chr15:30921917-31337510	Active TSS Weak transcription Strong transcription Enhancers Bivalent/Poised TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
3	nsv525795	chr15:30936285-31324531	Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
4	nsv903831	chr15:30986051-31723279	Flanking Active TSS Enhancers Active TSS Weak transcription Bivalent/Poised TSS Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	84 gene(s)	inside rSNPs	diseases
5	nsv1046874	chr15:31008133-31294654	Enhancers Strong transcription Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
6	nsv1054147	chr15:31014507-31972706	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
7	nsv542306	chr15:31014507-31972706	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
8	nsv832951	chr15:31131239-31304469	Strong transcription Active TSS Enhancers Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
9	nsv1036018	chr15:31140415-31544888	Enhancers Flanking Active TSS Active TSS Genic enhancers Strong transcription Weak transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
10	nsv903834	chr15:31179534-31293774	Weak transcription Genic enhancers Enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
11	esv33507	chr15:31183324-31471023	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
12	nsv832952	chr15:31204426-31333998	Strong transcription Enhancers Genic enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
13	nsv1052722	chr15:31261834-31609680	Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
14	nsv542315	chr15:31261834-31609680	Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Weak transcription Genic enhancers ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	52 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:31242000-31282800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr15:31248800-31283000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr15:31250200-31282200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr15:31250800-31282400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr15:31251200-31282400	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr15:31251600-31282200	Weak transcription	Hela-S3	cervix
7	chr15:31252800-31282400	Weak transcription	H1 Cell Line	embryonic stem cell
8	chr15:31256000-31282400	Weak transcription	Fetal Brain Male	brain
9	chr15:31258200-31277800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
10	chr15:31262200-31282200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
11	chr15:31266400-31278000	Weak transcription	Colonic Mucosa	Colon
12	chr15:31267800-31277800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr15:31267800-31282000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
14	chr15:31273000-31279600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
15	chr15:31274400-31278400	Enhancers	Brain Inferior Temporal Lobe	brain
16	chr15:31274800-31280000	Strong transcription	Fetal Intestine Large	intestine
17	chr15:31274800-31280400	Strong transcription	Fetal Muscle Trunk	muscle
18	chr15:31275000-31279400	Strong transcription	HUES48 Cell Line	embryonic stem cell
19	chr15:31275000-31281400	Genic enhancers	Primary B cells from peripheral blood	blood
20	chr15:31275400-31280800	Strong transcription	Primary hematopoietic stem cells	blood
21	chr15:31275600-31278200	Genic enhancers	Rectal Mucosa Donor 31	rectum
22	chr15:31275600-31278400	Genic enhancers	Duodenum Mucosa	Duodenum
23	chr15:31275600-31279800	Genic enhancers	Liver	Liver
24	chr15:31275600-31280200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
25	chr15:31275800-31278200	Genic enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
26	chr15:31276000-31277800	Enhancers	Ovary	ovary
27	chr15:31276000-31278200	Flanking Active TSS	Brain Hippocampus Middle	brain
28	chr15:31276000-31278200	Enhancers	Small Intestine	intestine
29	chr15:31276000-31279200	Enhancers	Psoas Muscle	Psoas
30	chr15:31276200-31278000	Enhancers	Cortex derived primary cultured neurospheres	brain
31	chr15:31276200-31278200	Flanking Active TSS	Brain Substantia Nigra	brain
32	chr15:31276400-31277800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
33	chr15:31276400-31277800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
34	chr15:31276400-31277800	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
35	chr15:31276400-31277800	Flanking Active TSS	HUVEC	blood vessel
36	chr15:31276600-31277800	Genic enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
37	chr15:31276600-31277800	Flanking Active TSS	GM12878-XiMat	blood
38	chr15:31276800-31277800	Enhancers	Fetal Brain Female	brain
39	chr15:31276800-31278000	Genic enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
40	chr15:31276800-31278000	Genic enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
41	chr15:31276800-31278200	Enhancers	NHDF-Ad	bronchial
42	chr15:31276800-31278400	Genic enhancers	Primary T cells from cord blood	blood
43	chr15:31276800-31278400	Genic enhancers	Primary T cells fromperipheralblood	blood
44	chr15:31276800-31279400	Enhancers	Fetal Heart	heart
45	chr15:31276800-31279400	Genic enhancers	Skeletal Muscle Female	skeletal muscle
46	chr15:31276800-31280400	Genic enhancers	Primary T helper cells fromperipheralblood	blood
47	chr15:31277000-31277800	Genic enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
48	chr15:31277000-31277800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
49	chr15:31277000-31277800	Flanking Active TSS	Adipose Nuclei	Adipose
50	chr15:31277000-31277800	Genic enhancers	Fetal Stomach	stomach

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