Variant report

Variant	rs35608243
Chromosome Location	chr2:174131392-174131393
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs13390766	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1822335	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4972540	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4972541	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1011724	chr2:173916482-174231908	Enhancers Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:90 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:174083400-174136400	Weak transcription	Esophagus	oesophagus
2	chr2:174099600-174134400	Weak transcription	Placenta	Placenta
3	chr2:174101600-174136400	Weak transcription	Hela-S3	cervix
4	chr2:174101800-174136200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr2:174105000-174133400	Weak transcription	NHLF	lung
6	chr2:174105000-174134400	Weak transcription	Colon Smooth Muscle	Colon
7	chr2:174118000-174132400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr2:174121600-174132800	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr2:174121600-174133600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
10	chr2:174122600-174133200	Strong transcription	Adipose Nuclei	Adipose
11	chr2:174122600-174136400	Weak transcription	Stomach Mucosa	stomach
12	chr2:174123400-174133000	Strong transcription	Liver	Liver
13	chr2:174123400-174133200	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr2:174123400-174133400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr2:174123800-174133000	Strong transcription	Stomach Smooth Muscle	stomach
16	chr2:174123800-174136800	Weak transcription	Cortex derived primary cultured neurospheres	brain
17	chr2:174125200-174133000	Weak transcription	NH-A	brain
18	chr2:174125800-174133000	Weak transcription	Skeletal Muscle Male	skeletal muscle
19	chr2:174126000-174138000	Weak transcription	Psoas Muscle	Psoas
20	chr2:174126400-174133200	Weak transcription	Skeletal Muscle Female	skeletal muscle
21	chr2:174126400-174138800	Weak transcription	Right Ventricle	heart
22	chr2:174127600-174133800	Weak transcription	HepG2	liver
23	chr2:174127800-174132000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
24	chr2:174128000-174132000	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
25	chr2:174128200-174132200	Weak transcription	Spleen	Spleen
26	chr2:174128200-174136200	Weak transcription	HSMMtube	muscle
27	chr2:174128400-174131400	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
28	chr2:174128400-174131400	Strong transcription	Fetal Stomach	stomach
29	chr2:174128400-174131400	Strong transcription	Lung	lung
30	chr2:174128400-174131600	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
31	chr2:174128400-174131600	Strong transcription	Osteobl	bone
32	chr2:174128400-174132000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
33	chr2:174128600-174131400	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
34	chr2:174128600-174131800	Strong transcription	Fetal Muscle Leg	muscle
35	chr2:174128600-174132800	Strong transcription	HMEC	breast
36	chr2:174128800-174131400	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
37	chr2:174128800-174131400	Strong transcription	Fetal Muscle Trunk	muscle
38	chr2:174128800-174131400	Strong transcription	Pancreas	Pancrea
39	chr2:174128800-174132800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
40	chr2:174129000-174131400	Strong transcription	Muscle Satellite Cultured Cells	--
41	chr2:174129600-174131800	Weak transcription	Thymus	Thymus
42	chr2:174129800-174131400	Strong transcription	Fetal Lung	lung
43	chr2:174129800-174131400	Weak transcription	Rectal Mucosa Donor 29	rectum
44	chr2:174129800-174133400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
45	chr2:174130000-174132000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
46	chr2:174130000-174132200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
47	chr2:174130000-174132200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
48	chr2:174130000-174132200	Weak transcription	Rectal Mucosa Donor 31	rectum
49	chr2:174130000-174132400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
50	chr2:174130000-174132400	Weak transcription	Small Intestine	intestine

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