Variant report

Variant	rs356089
Chromosome Location	chr1:55943124-55943125
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:55846916..55849878-chr1:55942589..55945159,2	K562	blood:

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs1321119	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs183065	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs189593	0.98[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs356091	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs356114	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs356115	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs356116	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs356117	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs356120	0.98[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs397876	0.82[AMR][1000 genomes]
rs418333	0.82[AMR][1000 genomes]
rs440336	0.82[AMR][1000 genomes]
rs692758	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs769895	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv10184	chr1:55728755-56084833	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1008241	chr1:55922008-55972596	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:55937200-55944200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr1:55938000-55944600	Enhancers	NHDF-Ad	bronchial
3	chr1:55939000-55944000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr1:55940000-55950000	Weak transcription	Colon Smooth Muscle	Colon
5	chr1:55940400-55946600	Weak transcription	Osteobl	bone
6	chr1:55940600-55943400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr1:55941000-55943600	Enhancers	Adipose Nuclei	Adipose
8	chr1:55941000-55944400	Weak transcription	HUVEC	blood vessel
9	chr1:55941000-55946800	Enhancers	Fetal Intestine Large	intestine
10	chr1:55941200-55943400	Weak transcription	Right Atrium	heart
11	chr1:55941400-55943200	Enhancers	Fetal Lung	lung
12	chr1:55941800-55943200	Bivalent Enhancer	HepG2	liver
13	chr1:55942000-55943200	Enhancers	Fetal Stomach	stomach
14	chr1:55942000-55943600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr1:55942000-55943600	Enhancers	Left Ventricle	heart
16	chr1:55942000-55943800	Enhancers	Fetal Muscle Leg	muscle
17	chr1:55942000-55946800	Enhancers	Fetal Intestine Small	intestine
18	chr1:55942200-55946000	Weak transcription	Pancreas	Pancrea
19	chr1:55942400-55943400	Weak transcription	Lung	lung
20	chr1:55942400-55943600	Weak transcription	Placenta	Placenta
21	chr1:55942400-55946000	Weak transcription	Sigmoid Colon	Sigmoid Colon
22	chr1:55942600-55943200	Enhancers	Liver	Liver
23	chr1:55942800-55944000	Enhancers	Fetal Kidney	kidney
24	chr1:55942800-55944200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
25	chr1:55943000-55943200	Enhancers	Skeletal Muscle Male	skeletal muscle
26	chr1:55943000-55944200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
27	chr1:55943000-55944800	Enhancers	Breast Myoepithelial Primary Cells	Breast

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links