Variant report

Variant	rs35611253
Chromosome Location	chr17:59800831-59800832
allele	-/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:82)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:82 , 50 per page) page: 1 2

No.	Distal block	Cell Line	Cell type
1	chr17:59800372..59801306-chr17:59822185..59823197,8	MCF-7	breast:
2	chr17:59800317..59801231-chr17:59822185..59823019,3	MCF-7	breast:
3	chr17:59800343..59801227-chr17:59843602..59844157,2	MCF-7	breast:
4	chr17:59800588..59801107-chr17:59916679..59917311,2	MCF-7	breast:
5	chr17:59476355..59477034-chr17:59800402..59800945,2	MCF-7	breast:
6	chr17:59800482..59801058-chr17:59822366..59823222,2	MCF-7	breast:
7	chr17:59788127..59788947-chr17:59800069..59800999,2	MCF-7	breast:
8	chr17:59800321..59801296-chr20:47480983..47481908,3	MCF-7	breast:
9	chr17:59489613..59491206-chr17:59800419..59803266,2	MCF-7	breast:
10	chr17:59433806..59434541-chr17:59800526..59801334,3	MCF-7	breast:
11	chr17:59800383..59801192-chr17:59835796..59836499,3	MCF-7	breast:
12	chr17:59800397..59801337-chr17:59877348..59878274,6	MCF-7	breast:
13	chr17:59800462..59801121-chr17:59809452..59810128,2	MCF-7	breast:
14	chr17:59800371..59801238-chr17:59939273..59939890,4	MCF-7	breast:
15	chr17:59800386..59801228-chr20:49343586..49344517,7	MCF-7	breast:
16	chr17:59800235..59800998-chr20:52278053..52278971,3	MCF-7	breast:
17	chr17:59800235..59800999-chr20:52278081..52278971,3	MCF-7	breast:
18	chr17:59476372..59477451-chr17:59800613..59801275,3	MCF-7	breast:
19	chr17:59800309..59801230-chr20:52739857..52740788,6	MCF-7	breast:
20	chr17:57084964..57085505-chr17:59800528..59801279,2	MCF-7	breast:
21	chr17:59800570..59801187-chr20:46704731..46705306,2	MCF-7	breast:
22	chr17:59800117..59801112-chr5:122184455..122185171,2	MCF-7	breast:
23	chr17:56716811..56717664-chr17:59800437..59801199,3	MCF-7	breast:
24	chr17:59800558..59801192-chr17:59809224..59809872,3	MCF-7	breast:
25	chr17:59800404..59801266-chr20:52765423..52766339,4	MCF-7	breast:
26	chr17:59800429..59801155-chr20:55837801..55838690,3	MCF-7	breast:
27	chr17:59800328..59801140-chr17:59939377..59940266,3	MCF-7	breast:
28	chr17:59800505..59801023-chr20:52765436..52766226,2	MCF-7	breast:
29	chr17:59638559..59639093-chr17:59800446..59801004,2	MCF-7	breast:
30	chr17:59488237..59489792-chr17:59800592..59802386,2	MCF-7	breast:
31	chr17:59800193..59801026-chr3:64477136..64477711,2	MCF-7	breast:
32	chr17:56716763..56717369-chr17:59800406..59801321,3	MCF-7	breast:
33	chr17:59782329..59785293-chr17:59799668..59801458,2	MCF-7	breast:
34	chr17:59800134..59800926-chr17:59916489..59917039,2	MCF-7	breast:
35	chr17:59800229..59801026-chr7:2102876..2103681,2	MCF-7	breast:
36	chr17:59800396..59801468-chr17:59877458..59878364,3	MCF-7	breast:
37	chr17:59800566..59802805-chr3:64485912..64488296,2	MCF-7	breast:
38	chr17:59800312..59801233-chr20:49343624..49344846,7	MCF-7	breast:
39	chr17:59476542..59477343-chr17:59800457..59801257,2	MCF-7	breast:
40	chr17:59800395..59801174-chr17:59877584..59878511,3	MCF-7	breast:
41	chr17:59800373..59801238-chr17:59939362..59940177,3	MCF-7	breast:
42	chr1:121484529..121485428-chr17:59800218..59800895,2	MCF-7	breast:
43	chr17:59800450..59801131-chr3:61793183..61793716,2	MCF-7	breast:
44	chr17:59799068..59802812-chr17:59939029..59942892,4	MCF-7	breast:
45	chr17:59800313..59801296-chr20:47480983..47481948,4	MCF-7	breast:
46	chr17:59799043..59801917-chr17:59870010..59871675,2	MCF-7	breast:
47	chr17:59800131..59801317-chr20:52765395..52766291,6	MCF-7	breast:
48	chr17:59800382..59801055-chr20:55837914..55838754,4	MCF-7	breast:
49	chr17:59800338..59801110-chr20:49380304..49380856,3	MCF-7	breast:
50	chr17:59800446..59802720-chr17:59893670..59895500,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000136492	Chromatin interaction
ENSG00000187013	Chromatin interaction
ENSG00000267280	Chromatin interaction
ENSG00000121068	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3378293	chr17:59744117-60124899	ZNF genes & repeats Strong transcription Weak transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	175 gene(s)	inside rSNPs	diseases
2	nsv908673	chr17:59767501-59926645	Weak transcription ZNF genes & repeats Genic enhancers Strong transcription Enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	94 gene(s)	inside rSNPs	diseases
3	nsv908674	chr17:59800827-59899790	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	56 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:59766000-59819000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr17:59778200-59805800	Weak transcription	Thymus	Thymus
3	chr17:59781600-59835400	Weak transcription	Hela-S3	cervix
4	chr17:59784400-59815200	Weak transcription	HMEC	breast
5	chr17:59786600-59815400	Weak transcription	Fetal Thymus	thymus
6	chr17:59792000-59815200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr17:59793200-59803400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr17:59793200-59819400	Weak transcription	NH-A	brain
9	chr17:59793600-59821200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
10	chr17:59794200-59815200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
11	chr17:59794200-59819600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr17:59794400-59815200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
13	chr17:59794400-59816200	Weak transcription	HUES48 Cell Line	embryonic stem cell
14	chr17:59794400-59848200	Weak transcription	HUVEC	blood vessel
15	chr17:59794600-59807200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr17:59794800-59806000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr17:59794800-59815200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr17:59796200-59805600	Weak transcription	Monocytes-CD14+_RO01746	blood
19	chr17:59796200-59805800	Weak transcription	A549	lung
20	chr17:59796200-59814400	Weak transcription	Primary hematopoietic stem cells	blood
21	chr17:59797400-59817600	Weak transcription	Cortex derived primary cultured neurospheres	brain
22	chr17:59797600-59813000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
23	chr17:59798200-59803400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
24	chr17:59798400-59803400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
25	chr17:59798400-59815000	Weak transcription	HUES6 Cell Line	embryonic stem cell
26	chr17:59798800-59816400	Weak transcription	H1 Cell Line	embryonic stem cell
27	chr17:59799000-59801000	Strong transcription	Dnd41	blood
28	chr17:59800400-59801000	Enhancers	HepG2	liver
29	chr17:59800800-59801000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
30	chr17:59800800-59803000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
31	chr17:59800800-59814400	Weak transcription	HUES64 Cell Line	embryonic stem cell

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