Variant report

Variant	rs35612883
Chromosome Location	chr7:14379828-14379829
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 2 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs2099282	0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949033	chr7:14086106-14860323	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:14376000-14380000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr7:14378400-14382600	Enhancers	iPS-18 Cell Line	embryonic stem cell
3	chr7:14378600-14381600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr7:14378600-14381800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr7:14378600-14382000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr7:14378800-14382000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr7:14379200-14380000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
8	chr7:14379400-14380000	Weak transcription	H1 Cell Line	embryonic stem cell
9	chr7:14379400-14381000	Enhancers	Fetal Lung	lung
10	chr7:14379400-14382000	Enhancers	HUES64 Cell Line	embryonic stem cell
11	chr7:14379600-14380000	Enhancers	Stomach Smooth Muscle	stomach
12	chr7:14379600-14381600	Enhancers	Cortex derived primary cultured neurospheres	brain
13	chr7:14379600-14381800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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