Variant report

Variant	rs35617320
Chromosome Location	chr18:39538043-39538044
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs11082256	0.80[EUR][1000 genomes]
rs12606434	0.81[EUR][1000 genomes]
rs12607810	0.80[EUR][1000 genomes]
rs12953847	0.81[EUR][1000 genomes]
rs12954899	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12956553	0.80[EUR][1000 genomes]
rs12957030	0.80[EUR][1000 genomes]
rs12959405	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12960971	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12962602	0.80[EUR][1000 genomes]
rs12962732	0.81[EUR][1000 genomes]
rs12966100	0.88[AMR][1000 genomes]
rs16975459	0.82[EUR][1000 genomes]
rs35269653	0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3813065	0.81[EUR][1000 genomes]
rs3819162	0.80[EUR][1000 genomes]
rs4121817	0.80[EUR][1000 genomes]
rs4283305	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62082284	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62082292	0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62082876	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7230883	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7233661	0.82[EUR][1000 genomes]
rs7237737	0.80[EUR][1000 genomes]
rs7237780	0.81[EUR][1000 genomes]
rs7237783	0.80[EUR][1000 genomes]
rs8095411	0.80[EUR][1000 genomes]
rs9646518	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9949895	0.80[EUR][1000 genomes]
rs9956832	0.80[EUR][1000 genomes]
rs9964331	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1066869	chr18:38742896-39680723	Enhancers Weak transcription Strong transcription Active TSS Genic enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv543685	chr18:38742896-39680723	Flanking Active TSS Enhancers Genic enhancers Strong transcription Weak transcription Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	nsv949609	chr18:39126941-40070286	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
4	nsv431979	chr18:39255558-39696452	Strong transcription Enhancers Genic enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
5	nsv1066029	chr18:39322920-39623625	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv543686	chr18:39322920-39623625	Strong transcription Weak transcription Active TSS Genic enhancers Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
7	nsv909566	chr18:39327962-39688452	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
8	esv34153	chr18:39398768-39872265	Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
9	nsv909567	chr18:39470190-39652939	Active TSS Weak transcription Strong transcription Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region miRNA target site	2 gene(s)	inside rSNPs	diseases
10	nsv909568	chr18:39491873-39768746	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:39536000-39538200	Weak transcription	Gastric	stomach
2	chr18:39536000-39541600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr18:39536000-39545400	Weak transcription	Lung	lung
4	chr18:39536000-39547000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr18:39536000-39547000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr18:39536000-39547000	Weak transcription	Left Ventricle	heart
7	chr18:39536000-39547200	Weak transcription	Esophagus	oesophagus
8	chr18:39536000-39621800	Weak transcription	Stomach Mucosa	stomach
9	chr18:39536200-39538200	Weak transcription	Fetal Thymus	thymus
10	chr18:39536200-39538400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
11	chr18:39536200-39542600	Weak transcription	Fetal Muscle Trunk	muscle
12	chr18:39536200-39547000	Weak transcription	Right Ventricle	heart
13	chr18:39536200-39547000	Weak transcription	Thymus	Thymus
14	chr18:39536200-39548000	Weak transcription	Colonic Mucosa	Colon
15	chr18:39536200-39552400	Weak transcription	H9 Cell Line	embryonic stem cell
16	chr18:39536200-39564800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
17	chr18:39536200-39568600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
18	chr18:39536400-39538200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
19	chr18:39536400-39538200	Weak transcription	Stomach Smooth Muscle	stomach
20	chr18:39536400-39538400	Enhancers	Brain Hippocampus Middle	brain
21	chr18:39536400-39540400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
22	chr18:39536400-39552400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
23	chr18:39536400-39578200	Weak transcription	A549	lung
24	chr18:39536600-39538200	Weak transcription	HUVEC	blood vessel
25	chr18:39536800-39538200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
26	chr18:39536800-39538200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
27	chr18:39536800-39538200	Weak transcription	Pancreas	Pancrea
28	chr18:39536800-39538400	Enhancers	Primary T helper naive cells from peripheral blood	blood
29	chr18:39536800-39538400	Enhancers	Primary T helper cells fromperipheralblood	blood
30	chr18:39536800-39539800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
31	chr18:39536800-39540200	Weak transcription	Fetal Stomach	stomach
32	chr18:39536800-39542400	Weak transcription	Brain Cingulate Gyrus	brain
33	chr18:39536800-39542400	Weak transcription	HMEC	breast
34	chr18:39536800-39544600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
35	chr18:39536800-39545200	Weak transcription	HSMMtube	muscle
36	chr18:39536800-39545400	Weak transcription	Psoas Muscle	Psoas
37	chr18:39536800-39545600	Weak transcription	Ovary	ovary
38	chr18:39536800-39545600	Weak transcription	Skeletal Muscle Male	skeletal muscle
39	chr18:39536800-39546800	Weak transcription	Brain Inferior Temporal Lobe	brain
40	chr18:39536800-39547000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
41	chr18:39536800-39547000	Weak transcription	Aorta	Aorta
42	chr18:39536800-39547000	Weak transcription	Placenta Amnion	Placenta Amnion
43	chr18:39536800-39547000	Weak transcription	Spleen	Spleen
44	chr18:39536800-39580000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
45	chr18:39536800-39633600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
46	chr18:39537000-39539200	Genic enhancers	Dnd41	blood
47	chr18:39537000-39545000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
48	chr18:39537000-39545200	Weak transcription	Fetal Heart	heart
49	chr18:39537000-39547600	Weak transcription	Fetal Brain Male	brain
50	chr18:39537200-39538200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin

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