Variant report

Variant	rs35617667
Chromosome Location	chr3:155340004-155340005
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 97 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:95)

rs_ID	r²[population]
rs10212586	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10212592	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10212593	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10804772	0.80[AFR][1000 genomes];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10936012	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11707218	0.80[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11924789	0.80[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12485814	0.85[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12632699	0.80[AFR][1000 genomes];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12638084	0.80[AFR][1000 genomes];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs13085349	0.80[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs13085986	0.80[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1401695	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1589237	0.80[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1589238	0.83[AFR][1000 genomes];0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1607589	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1607590	0.80[AFR][1000 genomes];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1607591	0.80[AFR][1000 genomes];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1878859	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1879089	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs189639	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1914799	0.80[AFR][1000 genomes];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2007826	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2203885	0.82[AMR][1000 genomes]
rs2315589	0.82[AMR][1000 genomes]
rs34936050	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs35184447	0.80[AFR][1000 genomes];0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs359555	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs359557	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs359573	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs36060711	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3908138	0.80[AFR][1000 genomes];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs3908139	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs3908140	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs3908141	0.80[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs3908142	0.80[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs3908143	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs3908144	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4083042	0.80[AFR][1000 genomes];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4287944	0.82[AMR][1000 genomes]
rs4401403	0.80[AFR][1000 genomes];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4680201	0.80[AFR][1000 genomes];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4680205	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4680208	0.82[AMR][1000 genomes]
rs484663	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs486714	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs497397	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs500051	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs517971	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs531139	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs538440	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs539240	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs55783463	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs56092312	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs56229209	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs62287281	0.80[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6441002	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6441003	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6441005	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs6767886	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6768777	0.80[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6779500	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6787055	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6787342	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6793225	0.80[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6800331	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6802475	0.80[AFR][1000 genomes];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6802975	0.80[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6803070	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7426747	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7433135	0.80[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7609669	0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7610412	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7610604	0.80[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7620630	0.82[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7620947	0.80[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7629025	0.80[AFR][1000 genomes];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7629557	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7641141	0.80[AFR][1000 genomes];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7642974	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7649660	0.87[AMR][1000 genomes]
rs9809924	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9810223	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9814374	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9814666	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9818926	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9828161	0.80[AFR][1000 genomes];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9828965	0.81[AMR][1000 genomes]
rs9829758	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9844708	0.83[AMR][1000 genomes]
rs9844732	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9845615	0.80[AFR][1000 genomes];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9847398	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9865998	0.80[AFR][1000 genomes];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9874559	0.80[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv822300	chr3:155338203-155344148	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv822301	chr3:155338203-155344202	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:155336800-155346200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr3:155338400-155347000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr3:155338600-155346400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
4	chr3:155338600-155347000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
5	chr3:155340000-155340200	Enhancers	Thymus	Thymus
6	chr3:155340000-155340800	Enhancers	Liver	Liver
7	chr3:155340000-155340800	Enhancers	HepG2	liver

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