Variant report

Variant	rs356177
Chromosome Location	chr4:90630675-90630676
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs11097231	0.85[EUR][1000 genomes]
rs168552	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs181489	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs181490	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2572322	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2572323	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2572324	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2736991	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs356166	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs356167	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs356169	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs356170	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs356171	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs356172	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs356173	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs356174	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs356175	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs356176	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs356180	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs356202	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs356205	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs356206	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs356207	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs356208	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs356210	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs356212	0.82[EUR][1000 genomes]
rs356213	0.83[EUR][1000 genomes]
rs356217	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs356218	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs356222	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs356224	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4437213	0.84[EUR][1000 genomes]
rs6825421	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6848708	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv470051	chr4:89644931-90643144	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	esv2830400	chr4:90085456-90922432	Flanking Active TSS Weak transcription Enhancers Strong transcription Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
3	nsv1012406	chr4:90167781-91166787	Active TSS Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
4	nsv949454	chr4:90272120-91156917	Flanking Bivalent TSS/Enh Active TSS Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
5	nsv461580	chr4:90572322-90630901	Enhancers Strong transcription Active TSS Flanking Active TSS Weak transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a
6	nsv594819	chr4:90572322-90630901	Weak transcription Active TSS Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a
7	nsv522681	chr4:90603044-90630901	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:90609800-90631800	Weak transcription	HMEC	breast
2	chr4:90628400-90631400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr4:90628600-90630800	Enhancers	Primary T cells from cord blood	blood
4	chr4:90628600-90631400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr4:90629200-90631400	Enhancers	HUVEC	blood vessel
6	chr4:90629600-90630800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr4:90629600-90630800	Enhancers	Brain Cingulate Gyrus	brain
8	chr4:90629600-90631000	Enhancers	Cortex derived primary cultured neurospheres	brain
9	chr4:90629600-90631200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr4:90629800-90630800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr4:90629800-90630800	Enhancers	HUES6 Cell Line	embryonic stem cell
12	chr4:90629800-90630800	Enhancers	iPS-15b Cell Line	embryonic stem cell
13	chr4:90629800-90631000	Enhancers	Fetal Thymus	thymus
14	chr4:90630000-90630800	Enhancers	HUES48 Cell Line	embryonic stem cell
15	chr4:90630000-90630800	Enhancers	iPS-20b Cell Line	embryonic stem cell
16	chr4:90630000-90630800	Enhancers	Muscle Satellite Cultured Cells	--
17	chr4:90630000-90630800	Enhancers	Brain Anterior Caudate	brain
18	chr4:90630000-90630800	Enhancers	Thymus	Thymus
19	chr4:90630000-90630800	Flanking Active TSS	Dnd41	blood
20	chr4:90630000-90630800	Enhancers	HSMMtube	muscle
21	chr4:90630000-90630800	Enhancers	NH-A	brain
22	chr4:90630000-90630800	Enhancers	Osteobl	bone
23	chr4:90630200-90630800	Enhancers	iPS-18 Cell Line	embryonic stem cell
24	chr4:90630400-90631000	Enhancers	Brain Hippocampus Middle	brain
25	chr4:90630400-90631000	Enhancers	Brain Substantia Nigra	brain
26	chr4:90630400-90632800	Weak transcription	HSMM	muscle
27	chr4:90630400-90633200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
28	chr4:90630400-90647400	Weak transcription	Fetal Lung	lung
29	chr4:90630400-90647600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
30	chr4:90630600-90630800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
31	chr4:90630600-90630800	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
32	chr4:90630600-90632400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
33	chr4:90630600-90640400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
34	chr4:90630600-90647400	Weak transcription	Ovary	ovary

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