Variant report

Variant	rs35620636
Chromosome Location	chr1:223198821-223198822
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs17479483	0.94[EUR][1000 genomes]
rs2066113	0.84[EUR][1000 genomes]
rs2789913	0.84[EUR][1000 genomes]
rs61838471	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs61838977	0.93[EUR][1000 genomes]
rs61838981	0.94[EUR][1000 genomes]
rs61838985	0.90[EUR][1000 genomes]
rs74145703	0.92[EUR][1000 genomes]
rs74148222	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs755352	0.81[EUR][1000 genomes]
rs9441855	0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999185	chr1:222500725-223278032	Strong transcription Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
2	nsv535304	chr1:222500725-223278032	Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
3	nsv1012537	chr1:222755091-223512243	Weak transcription Strong transcription Enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
4	nsv1014896	chr1:223070446-223327185	Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
5	nsv873207	chr1:223078802-223292632	Genic enhancers Enhancers Weak transcription Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv917330	chr1:223141547-223225893	Enhancers Genic enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:223184800-223204800	Weak transcription	Stomach Mucosa	stomach
2	chr1:223192200-223204200	Weak transcription	Right Ventricle	heart
3	chr1:223194800-223200000	Weak transcription	Gastric	stomach
4	chr1:223197200-223203600	Weak transcription	Hela-S3	cervix
5	chr1:223197200-223204200	Weak transcription	Right Atrium	heart
6	chr1:223197400-223203800	Weak transcription	Fetal Muscle Trunk	muscle
7	chr1:223197600-223199800	Weak transcription	Lung	lung
8	chr1:223197600-223200000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr1:223197600-223202200	Weak transcription	Left Ventricle	heart
10	chr1:223197800-223199200	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr1:223197800-223200000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr1:223197800-223200000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr1:223197800-223202200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
14	chr1:223197800-223204800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
15	chr1:223198200-223199200	Transcr. at gene 5' and 3'	ES-I3 Cell Line	embryonic stem cell
16	chr1:223198400-223199200	Transcr. at gene 5' and 3'	HUES6 Cell Line	embryonic stem cell
17	chr1:223198400-223199200	Transcr. at gene 5' and 3'	HUES64 Cell Line	embryonic stem cell
18	chr1:223198400-223199400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr1:223198600-223199200	Transcr. at gene 5' and 3'	iPS-20b Cell Line	embryonic stem cell
20	chr1:223198800-223199000	Enhancers	Fetal Muscle Leg	muscle
21	chr1:223198800-223199000	Enhancers	HSMMtube	muscle
22	chr1:223198800-223199200	Transcr. at gene 5' and 3'	H1 Cell Line	embryonic stem cell
23	chr1:223198800-223199200	Transcr. at gene 5' and 3'	H9 Cell Line	embryonic stem cell
24	chr1:223198800-223199200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
25	chr1:223198800-223199200	Transcr. at gene 5' and 3'	HUES48 Cell Line	embryonic stem cell
26	chr1:223198800-223199200	Transcr. at gene 5' and 3'	iPS-15b Cell Line	embryonic stem cell
27	chr1:223198800-223199200	Transcr. at gene 5' and 3'	iPS-18 Cell Line	embryonic stem cell
28	chr1:223198800-223199200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
29	chr1:223198800-223199400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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