Variant report

Variant	rs35627472
Chromosome Location	chr12:12121173-12121174
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:12119486..12122016-chr12:12155612..12157383,2	MCF-7	breast:

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs11613000	0.80[EUR][1000 genomes]
rs11614705	1.00[AFR][1000 genomes]
rs11614722	1.00[AFR][1000 genomes]
rs4406908	1.00[AFR][1000 genomes]
rs4433648	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73056129	1.00[AFR][1000 genomes]
rs73056196	1.00[AFR][1000 genomes]
rs73056201	0.86[AMR][1000 genomes]
rs73058013	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73058021	0.85[EUR][1000 genomes]
rs73058025	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949003	chr12:11938229-12618690	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
2	nsv898804	chr12:12058411-12202173	Weak transcription Enhancers Active TSS Bivalent Enhancer Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv898805	chr12:12119414-12156322	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Weak transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:12112000-12121400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
2	chr12:12112000-12123000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr12:12114600-12122600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr12:12115000-12122800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr12:12117400-12121600	Weak transcription	H1 Cell Line	embryonic stem cell
6	chr12:12117400-12121800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
7	chr12:12119200-12121200	Enhancers	Breast Myoepithelial Primary Cells	Breast
8	chr12:12120000-12121600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr12:12120000-12121800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
10	chr12:12120200-12121200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr12:12120400-12121200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr12:12120400-12121200	Enhancers	Primary hematopoietic stem cells short term culture	blood
13	chr12:12120400-12121200	Enhancers	Fetal Thymus	thymus
14	chr12:12120400-12121600	Enhancers	HUVEC	blood vessel
15	chr12:12120600-12121200	Enhancers	Skeletal Muscle Male	skeletal muscle
16	chr12:12120600-12121600	Enhancers	Skeletal Muscle Female	skeletal muscle
17	chr12:12120800-12125800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr12:12121000-12121200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
19	chr12:12121000-12121800	Enhancers	Primary hematopoietic stem cells	blood
20	chr12:12121000-12124000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell

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