Variant report

Variant	rs356279
Chromosome Location	chr13:86370932-86370933
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:86164717..86166503-chr13:86370230..86372028,2	MCF-7	breast:

Extended variants
information (count: 216 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:215)

rs_ID	r²[population]
rs1054544	0.83[CEU][hapmap];0.89[JPT][hapmap];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12583872	0.83[EUR][1000 genomes]
rs12583979	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12584693	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12585478	0.83[EUR][1000 genomes]
rs12585480	0.84[EUR][1000 genomes]
rs12585487	0.81[EUR][1000 genomes]
rs1337267	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1415400	0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1415401	0.82[ASN][1000 genomes]
rs1752877	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1752921	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17705118	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1832287	0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2344189	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2344190	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2987288	0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2987289	0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2987290	0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2987291	0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs34014305	0.81[EUR][1000 genomes]
rs34872500	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs35377374	0.82[EUR][1000 genomes]
rs356280	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs356281	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs35872949	0.85[EUR][1000 genomes]
rs35902655	0.82[EUR][1000 genomes]
rs583009	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs583370	0.89[EUR][1000 genomes]
rs583656	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs584777	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs587844	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs587896	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs588777	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs588858	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs589226	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs589634	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs590171	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs590231	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs590511	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs590644	0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs591368	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs591442	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs591499	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs592256	0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs592421	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs593709	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs593725	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs594386	0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs596310	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs597478	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs597514	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs598507	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs600520	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs601494	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs602824	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs602889	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs603661	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs603713	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs604220	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs605341	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs606300	0.88[EUR][1000 genomes]
rs606646	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs608338	0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs608988	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs609220	0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs609289	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs610033	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs611842	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs612609	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs612694	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs614345	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs617063	0.81[EUR][1000 genomes]
rs617544	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs617598	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs618855	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs618858	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs619390	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs621225	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs621988	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs622321	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs622377	0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs623412	0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs623794	0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs624935	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs625392	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs625506	0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs625955	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs627569	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs628741	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs628906	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs629467	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs629718	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs630378	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs630555	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs630795	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs631283	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs631418	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs631869	0.89[EUR][1000 genomes]
rs631906	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs632209	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs632261	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs632662	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs633573	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs633838	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs634766	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs635275	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs636160	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs637400	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs637726	0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs637772	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs637862	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs640570	0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs643365	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs645154	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs647958	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs648680	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs649499	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs651401	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs651838	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs652258	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs652301	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs652337	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs652731	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs654972	0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs657037	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs657759	0.81[ASN][1000 genomes]
rs658265	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs658322	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs658400	0.87[EUR][1000 genomes]
rs659603	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs660937	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs663116	0.81[ASN][1000 genomes]
rs663540	0.88[EUR][1000 genomes]
rs664215	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs664388	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs66539861	0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs666568	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs666881	0.88[EUR][1000 genomes]
rs666909	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs668321	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs669668	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs670101	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs670363	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs67108773	0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs67149025	0.83[EUR][1000 genomes]
rs672602	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs673100	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs673886	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs673888	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs674367	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs674815	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs674833	0.88[ASN][1000 genomes]
rs675263	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs675302	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs67665326	0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs677065	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs677487	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs677545	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs677569	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs677944	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs678467	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs678482	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs679684	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs680504	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs681306	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs681394	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs68151721	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs684595	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs684705	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs685786	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs685854	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs688448	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs689246	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs689282	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs694502	0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7326290	0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7981131	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7997887	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7998374	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7998717	0.89[EUR][1000 genomes]
rs9319176	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9319177	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9319178	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9566093	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9566094	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9566095	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9566096	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9566099	0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9566100	0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9566101	0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9566103	0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9566104	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9566105	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9566106	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9575945	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9575946	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9575947	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9575948	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9575949	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9575950	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9575951	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9575952	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9575954	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9575957	0.81[EUR][1000 genomes]
rs9575958	0.80[EUR][1000 genomes]
rs9575959	0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9575960	0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9575961	0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9575962	0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9575963	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9575964	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9575965	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9575966	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9635070	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1037563	chr13:85830511-86414012	Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:86335000-86372800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr13:86362400-86371000	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr13:86367000-86372200	Weak transcription	Fetal Muscle Trunk	muscle
4	chr13:86367200-86371200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr13:86368800-86371400	Weak transcription	Rectal Mucosa Donor 31	rectum
6	chr13:86370000-86371000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr13:86370000-86371600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr13:86370000-86373400	Active TSS	Duodenum Mucosa	Duodenum
9	chr13:86370000-86373600	Active TSS	Fetal Intestine Small	intestine
10	chr13:86370200-86373600	Active TSS	Fetal Intestine Large	intestine
11	chr13:86370400-86373600	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr13:86370400-86373600	Active TSS	Fetal Stomach	stomach
13	chr13:86370600-86371000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr13:86370600-86371200	Flanking Active TSS	Fetal Lung	lung
15	chr13:86370600-86373600	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr13:86370800-86372000	Weak transcription	HUES48 Cell Line	embryonic stem cell
17	chr13:86370800-86373800	Active TSS	Stomach Smooth Muscle	stomach

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