Variant report

Variant	rs35632395
Chromosome Location	chr2:179622849-179622850
allele	-/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs72647864	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73040346	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834470	chr2:179555152-179728726	Active TSS Genic enhancers Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv934108	chr2:179556852-179729925	Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:179483200-179655400	Weak transcription	Adipose Nuclei	Adipose
2	chr2:179533600-179669200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
3	chr2:179577800-179640800	Weak transcription	Fetal Intestine Large	intestine
4	chr2:179590800-179640400	Weak transcription	Primary T helper cells PMA-I stimulated	--
5	chr2:179605400-179662400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr2:179610800-179671400	Weak transcription	Ovary	ovary
7	chr2:179613000-179623600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
8	chr2:179614200-179626400	Strong transcription	Primary T cells from cord blood	blood
9	chr2:179614200-179645200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
10	chr2:179614400-179632400	Weak transcription	Primary hematopoietic stem cells	blood
11	chr2:179614800-179626600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
12	chr2:179614800-179628800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
13	chr2:179617200-179627800	Weak transcription	Psoas Muscle	Psoas
14	chr2:179618600-179626600	Genic enhancers	Fetal Heart	heart
15	chr2:179619000-179636000	Strong transcription	Left Ventricle	heart
16	chr2:179619200-179630400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
17	chr2:179619400-179625800	Genic enhancers	Skeletal Muscle Female	skeletal muscle
18	chr2:179620600-179634400	Weak transcription	Brain Anterior Caudate	brain
19	chr2:179620800-179624200	Strong transcription	Primary B cells from cord blood	blood
20	chr2:179621000-179623000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr2:179621000-179623000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
22	chr2:179621000-179623000	Enhancers	HMEC	breast
23	chr2:179621600-179623400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
24	chr2:179621800-179629200	Weak transcription	Right Ventricle	heart
25	chr2:179622000-179623600	Strong transcription	Fetal Muscle Trunk	muscle
26	chr2:179622200-179624000	Strong transcription	Primary T helper cells fromperipheralblood	blood
27	chr2:179622200-179628800	Weak transcription	Muscle Satellite Cultured Cells	--
28	chr2:179622400-179626400	Weak transcription	HSMM	muscle
29	chr2:179622600-179625000	Strong transcription	Skeletal Muscle Male	skeletal muscle
30	chr2:179622600-179628800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
31	chr2:179622600-179628800	Strong transcription	HSMMtube	muscle
32	chr2:179622600-179640600	Weak transcription	Pancreas	Pancrea
33	chr2:179622800-179623200	Weak transcription	Fetal Muscle Leg	muscle
34	chr2:179622800-179623800	Strong transcription	Primary T cells fromperipheralblood	blood
35	chr2:179622800-179626200	Weak transcription	NHDF-Ad	bronchial
36	chr2:179622800-179630000	Weak transcription	Primary B cells from peripheral blood	blood

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