Variant report

Variant	rs35641837
Chromosome Location	chr1:186814701-186814702
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs12720496	0.80[ASW][hapmap];1.00[MEX][hapmap];1.00[AMR][1000 genomes]
rs41516146	0.86[ASW][hapmap];1.00[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2762854	chr1:186547101-186847574	Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	nsv872590	chr1:186557453-187500338	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:186800200-186827800	Weak transcription	NHEK	skin
2	chr1:186801000-186818400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr1:186808600-186828200	Weak transcription	Pancreas	Pancrea
4	chr1:186808600-186830800	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr1:186810400-186824800	Weak transcription	Primary hematopoietic stem cells	blood
6	chr1:186811800-186814800	Weak transcription	Brain Hippocampus Middle	brain
7	chr1:186811800-186814800	Weak transcription	Duodenum Smooth Muscle	Duodenum
8	chr1:186812200-186814800	Weak transcription	Fetal Intestine Small	intestine
9	chr1:186812200-186817400	Weak transcription	Fetal Intestine Large	intestine
10	chr1:186812200-186817400	Weak transcription	Rectal Mucosa Donor 31	rectum
11	chr1:186813000-186814800	Weak transcription	Duodenum Mucosa	Duodenum
12	chr1:186813000-186817000	Weak transcription	Small Intestine	intestine
13	chr1:186813400-186816600	Weak transcription	Hela-S3	cervix
14	chr1:186814000-186815800	Enhancers	Breast Myoepithelial Primary Cells	Breast
15	chr1:186814200-186815000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
16	chr1:186814200-186815200	Enhancers	Colon Smooth Muscle	Colon
17	chr1:186814200-186815800	Enhancers	Primary monocytes fromperipheralblood	blood
18	chr1:186814400-186814800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr1:186814400-186814800	Enhancers	Stomach Smooth Muscle	stomach
20	chr1:186814400-186814800	Enhancers	GM12878-XiMat	blood
21	chr1:186814400-186815200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
22	chr1:186814400-186815200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
23	chr1:186814400-186815400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
24	chr1:186814400-186815400	Enhancers	Rectal Smooth Muscle	rectum
25	chr1:186814400-186816200	Enhancers	Cortex derived primary cultured neurospheres	brain
26	chr1:186814600-186814800	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr1:186814600-186814800	Enhancers	Primary hematopoietic stem cells short term culture	blood
28	chr1:186814600-186815000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
29	chr1:186814600-186815200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
30	chr1:186814600-186815200	Enhancers	A549	lung
31	chr1:186814600-186815200	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
32	chr1:186814600-186815400	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
33	chr1:186814600-186815400	Enhancers	Adipose Nuclei	Adipose
34	chr1:186814600-186815400	Enhancers	Stomach Mucosa	stomach
35	chr1:186814600-186815800	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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