Variant report

Variant	rs35647835
Chromosome Location	chr17:45292538-45292539
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:1)
CpG islands
(count:0)
Chromatin interactive
region (count:6)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:1 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	GATA3	chr17:45292343-45292773	SH-SY5Y	brain:	n/a	n/a

No data

(count:6 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr17:45265464..45268505-chr17:45290977..45295221,4	K562	blood:
2	chr17:45290405..45293270-chr17:45298817..45300612,2	K562	blood:
3	chr17:45281266..45284177-chr17:45290868..45295313,4	K562	blood:
4	chr17:45290579..45293565-chr17:45317348..45318861,2	K562	blood:
5	chr17:45292471..45294928-chr17:45296732..45298515,2	K562	blood:
6	chr17:45290115..45292672-chr17:45392018..45394562,2	K562	blood:

No data

No data

No data

Variant related genes	Relation type
MYL4	TF binding region
ENSG00000004897	Chromatin interaction
ENSG00000252088	Chromatin interaction
ENSG00000198336	Chromatin interaction

Extended variants
information (count: 2 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs11570461	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1062983	chr17:45030095-45789543	Strong transcription Active TSS Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	70 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:45284400-45293400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
2	chr17:45286600-45296200	Weak transcription	HUES6 Cell Line	embryonic stem cell
3	chr17:45287000-45294200	Weak transcription	Primary B cells from peripheral blood	blood
4	chr17:45288400-45302000	Weak transcription	HSMM	muscle
5	chr17:45288600-45296200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr17:45290600-45295000	Strong transcription	HSMMtube	muscle
7	chr17:45290800-45296200	Weak transcription	Right Atrium	heart
8	chr17:45291200-45294200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr17:45291400-45294400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
10	chr17:45291400-45294400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr17:45291600-45292800	Enhancers	Fetal Heart	heart
12	chr17:45291800-45292800	Enhancers	K562	blood
13	chr17:45291800-45295200	Weak transcription	Fetal Muscle Trunk	muscle
14	chr17:45291800-45295800	Weak transcription	Fetal Muscle Leg	muscle
15	chr17:45292400-45292600	Enhancers	Fetal Brain Female	brain
16	chr17:45292400-45292800	Enhancers	Fetal Brain Male	brain

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links