Variant report

Variant	rs35651536
Chromosome Location	chr15:56331561-56331562
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:56288413..56291274-chr15:56330655..56333525,2	MCF-7	breast:
2	chr15:56331376..56333572-chr15:56534686..56537481,2	MCF-7	breast:
3	chr15:56285854..56287620-chr15:56331269..56333297,2	K562	blood:
4	chr15:56284513..56287737-chr15:56330157..56337447,9	MCF-7	breast:
5	chr15:56331395..56333344-chr15:56535817..56538241,2	MCF-7	breast:
6	chr15:56326474..56328058-chr15:56328930..56331653,2	K562	blood:
7	chr15:56290352..56292488-chr15:56331467..56333363,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000151575	Chromatin interaction
ENSG00000181827	Chromatin interaction
ENSG00000069869	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs12913391	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs33999564	0.87[EUR][1000 genomes]
rs34346596	0.83[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs35614491	0.83[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs35757723	0.83[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs67156824	0.83[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2761872	chr15:56211065-56426501	Flanking Active TSS Enhancers Weak transcription Strong transcription Bivalent/Poised TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	nsv569546	chr15:56274443-56337527	Active TSS Enhancers Flanking Active TSS Weak transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	n/a
3	nsv833018	chr15:56325799-56492535	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:56327600-56334800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr15:56329000-56332400	Enhancers	Hela-S3	cervix
3	chr15:56329200-56332200	Weak transcription	Placenta	Placenta
4	chr15:56329400-56332400	Weak transcription	Liver	Liver
5	chr15:56329400-56334800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
6	chr15:56329800-56335000	Enhancers	Primary T helper cells PMA-I stimulated	--
7	chr15:56330200-56332400	Enhancers	NHEK	skin
8	chr15:56330200-56333400	Enhancers	Muscle Satellite Cultured Cells	--
9	chr15:56330200-56335400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr15:56330400-56334000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
11	chr15:56330400-56336400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr15:56330600-56331600	Enhancers	Primary T cells from cord blood	blood
13	chr15:56330600-56333400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
14	chr15:56330600-56333400	Enhancers	Placenta Amnion	Placenta Amnion
15	chr15:56330600-56333400	Enhancers	NHDF-Ad	bronchial
16	chr15:56330600-56333400	Enhancers	Osteobl	bone
17	chr15:56330600-56334000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr15:56330800-56331600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr15:56330800-56334000	Weak transcription	Primary T helper cells fromperipheralblood	blood
20	chr15:56330800-56334000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
21	chr15:56330800-56334600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
22	chr15:56330800-56336400	Enhancers	Fetal Intestine Large	intestine
23	chr15:56330800-56337400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
24	chr15:56331000-56332000	Weak transcription	HUVEC	blood vessel
25	chr15:56331000-56334000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
26	chr15:56331000-56334200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
27	chr15:56331000-56336200	Enhancers	Fetal Intestine Small	intestine
28	chr15:56331200-56332600	Enhancers	A549	lung
29	chr15:56331400-56331800	Enhancers	Stomach Mucosa	stomach
30	chr15:56331400-56332000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
31	chr15:56331400-56333400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
32	chr15:56331400-56334400	Enhancers	NHLF	lung
33	chr15:56331400-56335800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
34	chr15:56331400-56337800	Enhancers	HMEC	breast

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