Variant report

Variant	rs35651815
Chromosome Location	chr6:85823686-85823687
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs1536277	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs62420827	0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6923147	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1017418	chr6:85344786-86259540	Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Enhancers Bivalent/Poised TSS Strong transcription Weak transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
2	nsv538347	chr6:85344786-86259540	Weak transcription Enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:85821800-85823800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
2	chr6:85822000-85823800	Weak transcription	Brain Germinal Matrix	brain
3	chr6:85822800-85825400	Weak transcription	HUES48 Cell Line	embryonic stem cell
4	chr6:85823200-85823800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr6:85823400-85823800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr6:85823400-85823800	Enhancers	Fetal Brain Female	brain
7	chr6:85823400-85823800	Enhancers	Rectal Smooth Muscle	rectum
8	chr6:85823400-85823800	Enhancers	NHDF-Ad	bronchial
9	chr6:85823400-85824000	Enhancers	ES-I3 Cell Line	embryonic stem cell
10	chr6:85823400-85824000	Enhancers	Breast Myoepithelial Primary Cells	Breast
11	chr6:85823400-85824000	Enhancers	Ovary	ovary
12	chr6:85823400-85824400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr6:85823400-85824400	Active TSS	Psoas Muscle	Psoas
14	chr6:85823400-85824600	Flanking Active TSS	Osteobl	bone
15	chr6:85823600-85823800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr6:85823600-85823800	Bivalent Enhancer	Fetal Brain Male	brain
17	chr6:85823600-85824000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr6:85823600-85824000	Enhancers	Colon Smooth Muscle	Colon

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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