Variant report

Variant	rs35655388
Chromosome Location	chr15:100156665-100156666
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:100148518..100150039-chr15:100155372..100157267,2	MCF-7	breast:
2	chr15:100151549..100153058-chr15:100155251..100157136,2	MCF-7	breast:
3	chr15:100156211..100158384-chr15:100167394..100168954,2	MCF-7	breast:

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs12900424	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12913446	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12914317	0.85[AFR][1000 genomes];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12915690	0.96[ASN][1000 genomes]
rs12916795	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2290446	0.93[ASN][1000 genomes]
rs34222295	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs34513363	0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs34987456	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs35043171	0.93[ASN][1000 genomes]
rs35295124	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs35357315	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35480704	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs35487956	0.93[ASN][1000 genomes]
rs35585008	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs35912172	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3730280	0.80[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs3784450	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs67074319	0.85[AFR][1000 genomes];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs67381509	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67593144	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs71403454	0.95[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs71403455	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs8024380	0.95[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs8030451	0.95[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs8036677	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv904546	chr15:99696046-100166300	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Strong transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
2	nsv1036346	chr15:99752391-100365458	Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Enhancers Weak transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
3	nsv542520	chr15:99752391-100365458	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
4	nsv817201	chr15:99839238-100537341	Weak transcription Strong transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
5	nsv904558	chr15:100019382-100171684	ZNF genes & repeats Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:104 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:100133000-100157000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr15:100133000-100159200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr15:100133000-100159200	Weak transcription	A549	lung
4	chr15:100141000-100156800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
5	chr15:100141000-100157200	Weak transcription	Fetal Kidney	kidney
6	chr15:100142600-100159200	Weak transcription	Gastric	stomach
7	chr15:100142800-100157000	Weak transcription	Spleen	Spleen
8	chr15:100142800-100159200	Weak transcription	H1 Cell Line	embryonic stem cell
9	chr15:100142800-100159400	Weak transcription	Primary T cells fromperipheralblood	blood
10	chr15:100142800-100164000	Weak transcription	Fetal Thymus	thymus
11	chr15:100142800-100176400	Weak transcription	Fetal Stomach	stomach
12	chr15:100143000-100163200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr15:100143800-100159200	Weak transcription	Lung	lung
14	chr15:100144000-100159200	Weak transcription	Fetal Muscle Leg	muscle
15	chr15:100144000-100180800	Weak transcription	Thymus	Thymus
16	chr15:100145600-100159200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
17	chr15:100146200-100159200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
18	chr15:100148600-100159200	Weak transcription	Cortex derived primary cultured neurospheres	brain
19	chr15:100150800-100159200	Weak transcription	HSMM	muscle
20	chr15:100153000-100158600	Enhancers	Primary T helper cells PMA-I stimulated	--
21	chr15:100153200-100157000	Enhancers	GM12878-XiMat	blood
22	chr15:100153200-100160400	Enhancers	Liver	Liver
23	chr15:100153400-100159000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
24	chr15:100153400-100159400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
25	chr15:100154000-100157200	Weak transcription	Brain Anterior Caudate	brain
26	chr15:100154000-100158200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
27	chr15:100154000-100159600	Weak transcription	Stomach Smooth Muscle	stomach
28	chr15:100154200-100157000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
29	chr15:100154800-100158000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
30	chr15:100155000-100159400	Weak transcription	Hela-S3	cervix
31	chr15:100155200-100157000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
32	chr15:100155200-100157000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
33	chr15:100155200-100157000	Weak transcription	Brain Inferior Temporal Lobe	brain
34	chr15:100155200-100157000	Weak transcription	Rectal Smooth Muscle	rectum
35	chr15:100155200-100157000	Weak transcription	HMEC	breast
36	chr15:100155200-100157000	Weak transcription	NHEK	skin
37	chr15:100155200-100157200	Weak transcription	NHDF-Ad	bronchial
38	chr15:100155200-100158200	Enhancers	Primary T helper naive cells from peripheral blood	blood
39	chr15:100155200-100159200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
40	chr15:100155200-100159200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
41	chr15:100155200-100159200	Weak transcription	Muscle Satellite Cultured Cells	--
42	chr15:100155200-100159200	Weak transcription	Colonic Mucosa	Colon
43	chr15:100155200-100159200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
44	chr15:100155200-100159200	Weak transcription	Pancreas	Pancrea
45	chr15:100155200-100159200	Weak transcription	NHLF	lung
46	chr15:100155200-100160600	Enhancers	Fetal Heart	heart
47	chr15:100155200-100163600	Weak transcription	Dnd41	blood
48	chr15:100155200-100191000	Weak transcription	HSMMtube	muscle
49	chr15:100155400-100157000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
50	chr15:100155400-100157000	Weak transcription	Primary T helper cells fromperipheralblood	blood

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