Variant report

Variant	rs35657726
Chromosome Location	chr14:78209334-78209335
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:78208675..78210244-chr14:78222102..78225060,2	K562	blood:

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs1076496	0.94[ASN][1000 genomes]
rs12432030	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12587155	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12587584	0.97[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12587825	0.88[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12590320	0.80[EUR][1000 genomes]
rs12880300	0.80[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs12880840	0.84[ASN][1000 genomes]
rs12881898	0.89[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs12886631	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12891621	0.92[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12892669	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2267755	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2267757	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2270443	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2299931	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs35261431	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4540996	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4899676	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4903624	0.90[AMR][1000 genomes]
rs4903644	0.84[ASN][1000 genomes]
rs67408612	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7145979	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72688831	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs8003389	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs8003715	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758362	chr14:78074180-78262572	Flanking Active TSS Weak transcription Strong transcription Enhancers Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
2	esv2759998	chr14:78074180-78262572	Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
3	esv2757575	chr14:78104897-78212462	Strong transcription Bivalent/Poised TSS Weak transcription Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
4	esv34940	chr14:78104897-78222798	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
5	nsv521287	chr14:78108003-78211225	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
6	nsv1043788	chr14:78178490-78381190	Flanking Active TSS Strong transcription Weak transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
7	nsv519957	chr14:78208294-78211225	Strong transcription Weak transcription Enhancers Genic enhancers	TF binding region Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:78176200-78224000	Strong transcription	Primary monocytes fromperipheralblood	blood
2	chr14:78176200-78225400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr14:78176400-78223400	Strong transcription	iPS-20b Cell Line	embryonic stem cell
4	chr14:78176400-78224200	Strong transcription	Monocytes-CD14+_RO01746	blood
5	chr14:78176600-78213200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
6	chr14:78176600-78223200	Strong transcription	Fetal Muscle Leg	muscle
7	chr14:78176600-78224200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr14:78176800-78210800	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr14:78176800-78221800	Strong transcription	Primary B cells from peripheral blood	blood
10	chr14:78176800-78222200	Strong transcription	HUES6 Cell Line	embryonic stem cell
11	chr14:78177000-78211000	Weak transcription	Stomach Mucosa	stomach
12	chr14:78177000-78222600	Strong transcription	HUES64 Cell Line	embryonic stem cell
13	chr14:78177000-78224200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr14:78177200-78223800	Strong transcription	Dnd41	blood
15	chr14:78177400-78222400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr14:78190600-78213400	Strong transcription	HUES48 Cell Line	embryonic stem cell
17	chr14:78192200-78215400	Weak transcription	Small Intestine	intestine
18	chr14:78196200-78217800	Strong transcription	Fetal Stomach	stomach
19	chr14:78199000-78225200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
20	chr14:78199200-78212400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr14:78199200-78215800	Weak transcription	Esophagus	oesophagus
22	chr14:78199400-78211800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
23	chr14:78199600-78225000	Weak transcription	Fetal Heart	heart
24	chr14:78200800-78212800	Strong transcription	Primary T cells from cord blood	blood
25	chr14:78201200-78212600	Weak transcription	Gastric	stomach
26	chr14:78201600-78226600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
27	chr14:78203400-78215400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
28	chr14:78203400-78217400	Weak transcription	Aorta	Aorta
29	chr14:78203800-78211000	Weak transcription	HMEC	breast
30	chr14:78203800-78219400	Weak transcription	Fetal Brain Male	brain
31	chr14:78204000-78212000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
32	chr14:78204000-78215200	Weak transcription	Hela-S3	cervix
33	chr14:78205000-78211800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
34	chr14:78205000-78213800	Weak transcription	Colonic Mucosa	Colon
35	chr14:78205000-78215800	Weak transcription	Right Ventricle	heart
36	chr14:78205000-78216000	Weak transcription	Psoas Muscle	Psoas
37	chr14:78205200-78209800	Weak transcription	Stomach Smooth Muscle	stomach
38	chr14:78205200-78209800	Weak transcription	A549	lung
39	chr14:78205200-78210000	Weak transcription	Brain Germinal Matrix	brain
40	chr14:78205200-78211000	Weak transcription	Brain Cingulate Gyrus	brain
41	chr14:78205200-78211000	Weak transcription	Fetal Kidney	kidney
42	chr14:78205200-78211400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
43	chr14:78205200-78213600	Weak transcription	Ovary	ovary
44	chr14:78205200-78213800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
45	chr14:78205200-78213800	Weak transcription	Pancreas	Pancrea
46	chr14:78205200-78213800	Weak transcription	Spleen	Spleen
47	chr14:78205400-78210000	Weak transcription	Left Ventricle	heart
48	chr14:78205400-78210000	Weak transcription	Lung	lung
49	chr14:78205400-78210000	Weak transcription	Thymus	Thymus
50	chr14:78205400-78211000	Weak transcription	Brain Inferior Temporal Lobe	brain

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