Variant report

Variant	rs35659772
Chromosome Location	chr2:48917842-48917843
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs12992968	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12994052	0.90[EUR][1000 genomes]
rs13015658	0.83[EUR][1000 genomes]
rs13017672	0.81[EUR][1000 genomes]
rs13021383	0.94[AMR][1000 genomes]
rs13022990	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs13023337	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs13028463	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs13029396	0.88[AMR][1000 genomes]
rs17398156	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34113862	0.90[EUR][1000 genomes]
rs34156631	0.85[EUR][1000 genomes]
rs34290007	0.83[EUR][1000 genomes]
rs34328825	1.00[EUR][1000 genomes]
rs34473191	0.82[EUR][1000 genomes]
rs34640290	0.94[AMR][1000 genomes]
rs34793022	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs35143434	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs35241494	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs35269604	0.83[EUR][1000 genomes]
rs35372579	0.83[EUR][1000 genomes]
rs35446259	0.94[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs35606429	0.83[EUR][1000 genomes]
rs35803851	1.00[AMR][1000 genomes]
rs35895384	0.83[EUR][1000 genomes]
rs35933416	1.00[AMR][1000 genomes]
rs55824140	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs55957451	0.82[EUR][1000 genomes]
rs56038740	0.90[EUR][1000 genomes]
rs56086985	0.83[EUR][1000 genomes]
rs6545053	0.83[EUR][1000 genomes]
rs66991447	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs67628224	0.94[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7569645	0.97[EUR][1000 genomes]
rs7592776	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1010494	chr2:48767055-49027310	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv1002793	chr2:48771220-49466550	ZNF genes & repeats Enhancers Weak transcription Bivalent Enhancer Strong transcription Genic enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
3	nsv1004965	chr2:48796170-49443587	Bivalent Enhancer Enhancers Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
4	nsv535684	chr2:48796170-49443587	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
5	nsv498119	chr2:48808834-49422647	Weak transcription Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
6	nsv833992	chr2:48814223-48998037	Flanking Bivalent TSS/Enh Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:48863000-48919600	Weak transcription	Colon Smooth Muscle	Colon
2	chr2:48874200-48919600	Weak transcription	Duodenum Smooth Muscle	Duodenum
3	chr2:48898800-48920200	Weak transcription	Ovary	ovary
4	chr2:48908000-48920000	Weak transcription	Stomach Smooth Muscle	stomach
5	chr2:48917400-48918000	Enhancers	Adipose Nuclei	Adipose
6	chr2:48917400-48918000	Enhancers	Osteobl	bone
7	chr2:48917600-48918200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr2:48917800-48918000	Enhancers	ES-I3 Cell Line	embryonic stem cell
9	chr2:48917800-48918000	Enhancers	HUES64 Cell Line	embryonic stem cell
10	chr2:48917800-48918000	Enhancers	iPS-20b Cell Line	embryonic stem cell
11	chr2:48917800-48918200	Enhancers	iPS-18 Cell Line	embryonic stem cell

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