Variant report

Variant	rs35660276
Chromosome Location	chr19:44951058-44951059
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr19:44943302..44945039-chr19:44949039..44951597,2	MCF-7	breast:
2	chr19:44945678..44948451-chr19:44948958..44951509,3	MCF-7	breast:
3	chr19:44699013..44701606-chr19:44950381..44952368,2	MCF-7	breast:

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs2571160	0.86[CHB][hapmap];0.81[JPT][hapmap]
rs2571162	0.85[CHB][hapmap]
rs2571165	0.90[CHB][hapmap];0.81[JPT][hapmap]
rs2571167	1.00[CEU][hapmap];0.97[GIH][hapmap];0.97[TSI][hapmap]
rs2722698	0.95[CHB][hapmap];0.80[JPT][hapmap]
rs2722701	0.86[CHB][hapmap];0.81[JPT][hapmap]
rs926054	1.00[LWK][hapmap];0.92[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv912112	chr19:44853707-45011727	Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
2	nsv912114	chr19:44858776-45002563	ZNF genes & repeats Strong transcription Flanking Active TSS Weak transcription Active TSS Enhancers Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
3	nsv1061350	chr19:44869075-45035469	Active TSS ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:73 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:44928400-44951800	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr19:44932000-44953200	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
3	chr19:44936000-44951400	Weak transcription	Fetal Heart	heart
4	chr19:44936400-44952000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr19:44937400-44951800	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr19:44938400-44951800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr19:44938800-44951600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr19:44940200-44951200	ZNF genes & repeats	Primary hematopoietic stem cells	blood
9	chr19:44940600-44951800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
10	chr19:44940600-44951800	Weak transcription	Fetal Thymus	thymus
11	chr19:44942200-44951800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr19:44942400-44951400	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr19:44942600-44952000	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
14	chr19:44944400-44952200	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
15	chr19:44944600-44952200	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
16	chr19:44945000-44951200	ZNF genes & repeats	Stomach Smooth Muscle	stomach
17	chr19:44945200-44951200	Strong transcription	Cortex derived primary cultured neurospheres	brain
18	chr19:44945400-44951200	Strong transcription	Muscle Satellite Cultured Cells	--
19	chr19:44945600-44951800	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr19:44946200-44951800	Weak transcription	HUVEC	blood vessel
21	chr19:44946400-44951400	ZNF genes & repeats	Brain Germinal Matrix	brain
22	chr19:44946400-44953000	ZNF genes & repeats	Aorta	Aorta
23	chr19:44947000-44951800	Weak transcription	Placenta Amnion	Placenta Amnion
24	chr19:44947400-44951200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
25	chr19:44947400-44951400	Weak transcription	Right Ventricle	heart
26	chr19:44947400-44951400	Weak transcription	NHDF-Ad	bronchial
27	chr19:44947800-44951800	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
28	chr19:44948200-44951600	ZNF genes & repeats	Fetal Lung	lung
29	chr19:44948200-44951800	ZNF genes & repeats	A549	lung
30	chr19:44948200-44959800	ZNF genes & repeats	Liver	Liver
31	chr19:44948400-44951200	ZNF genes & repeats	Primary T helper naive cells fromperipheralblood	blood
32	chr19:44948400-44951600	Strong transcription	HSMM	muscle
33	chr19:44948400-44952200	ZNF genes & repeats	Brain Dorsolateral Prefrontal Cortex	brain
34	chr19:44948600-44951400	Strong transcription	HSMMtube	muscle
35	chr19:44948600-44953200	ZNF genes & repeats	Primary B cells from peripheral blood	blood
36	chr19:44948800-44951800	Strong transcription	Fetal Intestine Large	intestine
37	chr19:44948800-44951800	Weak transcription	NH-A	brain
38	chr19:44949400-44951600	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
39	chr19:44949400-44951600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
40	chr19:44949400-44951600	Weak transcription	Colon Smooth Muscle	Colon
41	chr19:44949600-44951600	ZNF genes & repeats	Psoas Muscle	Psoas
42	chr19:44949600-44954200	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
43	chr19:44949800-44951800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
44	chr19:44949800-44951800	ZNF genes & repeats	Primary T cells from cord blood	blood
45	chr19:44950000-44952000	ZNF genes & repeats	Fetal Muscle Trunk	muscle
46	chr19:44950200-44951400	Weak transcription	NHEK	skin
47	chr19:44950200-44951600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
48	chr19:44950400-44951400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
49	chr19:44950400-44951400	Weak transcription	Osteobl	bone
50	chr19:44950400-44951600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links