Variant report

Variant	rs35661204
Chromosome Location	chr16:30610876-30610877
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr16:30609903..30615158-chr16:30618812..30624343,6	K562	blood:
2	chr16:30439562..30441742-chr16:30608518..30613093,5	MCF-7	breast:
3	chr16:30609710..30612542-chr16:30613790..30615801,2	K562	blood:
4	chr16:30454972..30458027-chr16:30607441..30611174,4	K562	blood:
5	chr16:30595906..30597796-chr16:30608971..30611051,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000197162	Chromatin interaction
ENSG00000179958	Chromatin interaction
ENSG00000156853	Chromatin interaction
ENSG00000179918	Chromatin interaction
ENSG00000260167	Chromatin interaction

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs12918327	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs28728333	0.85[ASN][1000 genomes]
rs28841118	0.85[ASN][1000 genomes]
rs34114657	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs34699226	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs36064568	0.80[ASN][1000 genomes]
rs4485386	0.85[ASN][1000 genomes]
rs55875685	0.93[ASN][1000 genomes]
rs6565195	0.84[ASN][1000 genomes]
rs67693285	0.85[ASN][1000 genomes]
rs7184055	0.82[ASN][1000 genomes]
rs7185620	0.85[ASN][1000 genomes]
rs7186852	0.85[ASN][1000 genomes]
rs7187071	0.85[ASN][1000 genomes]
rs7187802	0.82[ASN][1000 genomes]
rs7188789	0.82[ASN][1000 genomes]
rs7191389	0.85[ASN][1000 genomes]
rs7191761	0.85[ASN][1000 genomes]
rs7194347	0.85[ASN][1000 genomes]
rs7197475	0.85[ASN][1000 genomes]
rs7204632	0.85[ASN][1000 genomes]
rs7499339	0.84[ASN][1000 genomes]
rs9925025	0.85[ASN][1000 genomes]
rs9927137	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1062456	chr16:30442166-31253997	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	437 gene(s)	inside rSNPs	diseases
2	nsv542898	chr16:30442166-31253997	Enhancers Active TSS Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	437 gene(s)	inside rSNPs	diseases
3	nsv905727	chr16:30564526-30689696	Active TSS Flanking Active TSS Weak transcription Genic enhancers Strong transcription Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	88 gene(s)	inside rSNPs	diseases
4	nsv542899	chr16:30575260-30612385	Enhancers Flanking Active TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh Weak transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:102 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:30597800-30613400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr16:30597800-30613400	Weak transcription	Brain Anterior Caudate	brain
3	chr16:30597800-30613400	Weak transcription	Spleen	Spleen
4	chr16:30597800-30613600	Weak transcription	Fetal Lung	lung
5	chr16:30597800-30613600	Weak transcription	Placenta Amnion	Placenta Amnion
6	chr16:30597800-30613800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
7	chr16:30597800-30613800	Weak transcription	HSMM	muscle
8	chr16:30597800-30614000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
9	chr16:30597800-30614000	Weak transcription	Left Ventricle	heart
10	chr16:30597800-30614000	Weak transcription	Rectal Smooth Muscle	rectum
11	chr16:30597800-30614000	Weak transcription	Skeletal Muscle Female	skeletal muscle
12	chr16:30597800-30614200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr16:30597800-30614200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr16:30597800-30614200	Weak transcription	H9 Cell Line	embryonic stem cell
15	chr16:30597800-30614200	Weak transcription	Sigmoid Colon	Sigmoid Colon
16	chr16:30597800-30614400	Weak transcription	Ovary	ovary
17	chr16:30597800-30614800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
18	chr16:30597800-30615000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
19	chr16:30597800-30615000	Weak transcription	Fetal Kidney	kidney
20	chr16:30597800-30615200	Weak transcription	Esophagus	oesophagus
21	chr16:30597800-30615600	Weak transcription	Right Atrium	heart
22	chr16:30597800-30615600	Weak transcription	Small Intestine	intestine
23	chr16:30598000-30613200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
24	chr16:30598000-30613400	Weak transcription	Primary T cells from cord blood	blood
25	chr16:30598000-30613400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
26	chr16:30598000-30613600	Weak transcription	Stomach Smooth Muscle	stomach
27	chr16:30598000-30614000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
28	chr16:30598000-30614000	Weak transcription	HMEC	breast
29	chr16:30598000-30614200	Weak transcription	H1 Cell Line	embryonic stem cell
30	chr16:30598000-30614200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
31	chr16:30598000-30615400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
32	chr16:30598200-30613400	Weak transcription	Rectal Mucosa Donor 29	rectum
33	chr16:30598400-30612000	Weak transcription	Fetal Brain Female	brain
34	chr16:30598400-30613400	Weak transcription	Skeletal Muscle Male	skeletal muscle
35	chr16:30598400-30613800	Weak transcription	Brain Inferior Temporal Lobe	brain
36	chr16:30598400-30614200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
37	chr16:30598400-30620000	Weak transcription	Fetal Brain Male	brain
38	chr16:30598400-30620200	Weak transcription	HUVEC	blood vessel
39	chr16:30598600-30613800	Weak transcription	Cortex derived primary cultured neurospheres	brain
40	chr16:30598600-30614200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
41	chr16:30598600-30614400	Weak transcription	Lung	lung
42	chr16:30598600-30619000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
43	chr16:30598800-30613400	Weak transcription	Fetal Muscle Trunk	muscle
44	chr16:30599200-30613200	Weak transcription	Thymus	Thymus
45	chr16:30599400-30613400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
46	chr16:30599400-30614000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
47	chr16:30599400-30614200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
48	chr16:30599600-30612200	Weak transcription	Brain Germinal Matrix	brain
49	chr16:30599600-30613400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
50	chr16:30599600-30613400	Weak transcription	GM12878-XiMat	blood

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