Variant report

Variant	rs35662223
Chromosome Location	chr17:46089813-46089814
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr17:45973275..45976103-chr17:46088600..46091071,2	K562	blood:
2	chr17:46050479..46052242-chr17:46089337..46091891,2	K562	blood:
3	chr17:45946630..45948795-chr17:46087511..46090189,2	K562	blood:
4	chr17:46087197..46088712-chr17:46089794..46092489,2	MCF-7	breast:
5	chr17:46083495..46085251-chr17:46088576..46090117,2	MCF-7	breast:
6	chr17:45973448..45975240-chr17:46087666..46090341,2	MCF-7	breast:
7	chr17:46083701..46085989-chr17:46089198..46091342,3	K562	blood:
8	chr17:46046725..46049837-chr17:46087369..46090081,4	K562	blood:

No data

Variant related genes	Relation type
ENSG00000108465	Chromatin interaction
ENSG00000167182	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs12935890	0.92[AFR][1000 genomes];0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs35653190	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv469808	chr17:46049868-46228673	Enhancers Weak transcription Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	85 gene(s)	inside rSNPs	diseases
2	nsv482897	chr17:46049868-46228673	Enhancers Active TSS Weak transcription Strong transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	85 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:105 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:46082600-46090000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr17:46088800-46090000	Active TSS	ES-WA7 Cell Line	embryonic stem cell
3	chr17:46088800-46090000	Active TSS	H9 Cell Line	embryonic stem cell
4	chr17:46088800-46090000	Active TSS	HUES64 Cell Line	embryonic stem cell
5	chr17:46088800-46090000	Active TSS	iPS-15b Cell Line	embryonic stem cell
6	chr17:46088800-46090000	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr17:46088800-46090000	Enhancers	Lung	lung
8	chr17:46088800-46090000	Active TSS	Right Atrium	heart
9	chr17:46088800-46090200	Bivalent Enhancer	Primary Natural Killer cells fromperipheralblood	blood
10	chr17:46088800-46090200	Enhancers	Ovary	ovary
11	chr17:46088800-46090200	Enhancers	Pancreas	Pancrea
12	chr17:46088800-46090400	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr17:46089000-46090000	Active TSS	HUES48 Cell Line	embryonic stem cell
14	chr17:46089000-46090000	Flanking Bivalent TSS/Enh	Fetal Muscle Trunk	muscle
15	chr17:46089000-46090000	Bivalent/Poised TSS	Psoas Muscle	Psoas
16	chr17:46089000-46090200	Flanking Bivalent TSS/Enh	Stomach Smooth Muscle	stomach
17	chr17:46089200-46090000	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
18	chr17:46089200-46090000	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
19	chr17:46089200-46090000	Active TSS	iPS-20b Cell Line	embryonic stem cell
20	chr17:46089200-46090000	Active TSS	Fetal Brain Female	brain
21	chr17:46089200-46090000	Flanking Active TSS	Thymus	Thymus
22	chr17:46089200-46090200	Bivalent Enhancer	Primary T helper memory cells from peripheral blood 2	blood
23	chr17:46089200-46090200	Bivalent Enhancer	Primary T killer memory cells from peripheral blood	blood
24	chr17:46089200-46090200	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Male	--
25	chr17:46089200-46090200	Bivalent Enhancer	Fetal Heart	heart
26	chr17:46089200-46090400	Enhancers	HSMMtube	muscle
27	chr17:46089400-46090000	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr17:46089400-46090000	Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
29	chr17:46089400-46090000	Active TSS	HUES6 Cell Line	embryonic stem cell
30	chr17:46089400-46090000	Bivalent/Poised TSS	IMR90 fetal lung fibroblasts Cell Line	lung
31	chr17:46089400-46090000	Bivalent/Poised TSS	Foreskin Fibroblast Primary Cells skin01	Skin
32	chr17:46089400-46090000	Active TSS	Brain Germinal Matrix	brain
33	chr17:46089400-46090000	Active TSS	HSMM	muscle
34	chr17:46089400-46090000	Bivalent/Poised TSS	NHLF	lung
35	chr17:46089400-46090400	Bivalent Enhancer	Primary B cells from peripheral blood	blood
36	chr17:46089400-46090400	Enhancers	Placenta	Placenta
37	chr17:46089400-46090400	Enhancers	K562	blood
38	chr17:46089400-46095000	Weak transcription	A549	lung
39	chr17:46089600-46090000	Bivalent/Poised TSS	H1 Cell Line	embryonic stem cell
40	chr17:46089600-46090000	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
41	chr17:46089600-46090000	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
42	chr17:46089600-46090000	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
43	chr17:46089600-46090000	Active TSS	Brain Angular Gyrus	brain
44	chr17:46089600-46090000	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
45	chr17:46089600-46090000	Flanking Active TSS	Right Ventricle	heart
46	chr17:46089600-46090000	Active TSS	GM12878-XiMat	blood
47	chr17:46089600-46090000	Active TSS	Osteobl	bone
48	chr17:46089600-46090200	Flanking Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
49	chr17:46089600-46090200	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin02	Skin
50	chr17:46089600-46090200	Bivalent/Poised TSS	Colonic Mucosa	Colon

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