Variant report

Variant	rs35666345
Chromosome Location	chr2:72989658-72989659
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10204141	0.84[ASN][1000 genomes]
rs11126381	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11126384	0.92[AFR][1000 genomes];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11686536	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11693376	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12476137	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12479094	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12994646	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs13008515	0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1396107	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1508060	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1532970	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1876489	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1876490	0.92[AFR][1000 genomes];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2068410	0.89[ASN][1000 genomes]
rs2135982	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2420882	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4597553	0.89[ASN][1000 genomes]
rs4852891	0.86[AFR][1000 genomes]
rs6546787	0.83[EUR][1000 genomes]
rs6727086	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6744758	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6758539	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6758802	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7583914	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7586339	0.84[ASN][1000 genomes]
rs7600718	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs970577	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834259	chr2:72941118-73114106	Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:72923000-73008600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr2:72981400-73000800	Weak transcription	Pancreas	Pancrea
3	chr2:72983200-72997800	Weak transcription	Brain Hippocampus Middle	brain
4	chr2:72983200-72999200	Weak transcription	Left Ventricle	heart
5	chr2:72983800-72990200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr2:72984000-72990400	Weak transcription	NH-A	brain
7	chr2:72984200-72992800	Weak transcription	HSMM	muscle
8	chr2:72984800-72993200	Weak transcription	Osteobl	bone
9	chr2:72985200-72990000	Weak transcription	NHEK	skin
10	chr2:72985200-72990200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr2:72985200-72990600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr2:72985200-72994200	Weak transcription	Sigmoid Colon	Sigmoid Colon
13	chr2:72985200-73008400	Weak transcription	Right Atrium	heart
14	chr2:72985200-73015800	Weak transcription	Ovary	ovary
15	chr2:72988000-72991000	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
16	chr2:72988400-72990000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr2:72989200-72990600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
18	chr2:72989200-72992200	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
19	chr2:72989400-72990800	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
20	chr2:72989400-73015800	Weak transcription	Placenta	Placenta
21	chr2:72989600-72990400	ZNF genes & repeats	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
22	chr2:72989600-72990600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
23	chr2:72989600-73004000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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