Variant report

Variant	rs35667297
Chromosome Location	chr7:15726297-15726298
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr7:15725770-15727070	HUVEC	blood vessel:	n/a	n/a
2	POLR2A	chr7:15725676-15727219	ProgFib	skin:	n/a	n/a
3	MYC	chr7:15726201-15726625	HUVEC	blood vessel:	n/a	chr7:15726423-15726432
4	MAX	chr7:15725015-15727240	H1-hESC	embryonic stem cell:	n/a	chr7:15726423-15726432 chr7:15726648-15726656 chr7:15725326-15725339 chr7:15725328-15725335 chr7:15725180-15725190
5	POLR2A	chr7:15725919-15726739	HUVEC	blood vessel:	n/a	n/a
6	SUZ12	chr7:15724111-15727909	NT2-D1	testis:	n/a	n/a
7	MAX	chr7:15725859-15727090	HUVEC	blood vessel:	n/a	chr7:15726423-15726432 chr7:15726648-15726656
8	KAP1	chr7:15724606-15726663	HEK293	kidney:	n/a	n/a
9	CTCF	chr7:15726280-15726430	HUVEC	blood vessel:	n/a	n/a
10	CTBP2	chr7:15725165-15727652	H1-hESC	embryonic stem cell:	n/a	n/a
11	E2F6	chr7:15724928-15727574	H1-hESC	embryonic stem cell:	n/a	chr7:15725496-15725510 chr7:15726762-15726769
12	E2F6	chr7:15725126-15727619	H1-hESC	embryonic stem cell:	n/a	chr7:15725496-15725510 chr7:15726762-15726769
13	POLR2A	chr7:15726054-15726689	HUVEC	blood vessel:	n/a	n/a
14	MAX	chr7:15725864-15727273	H1-hESC	embryonic stem cell:	n/a	chr7:15726423-15726432 chr7:15726648-15726656
15	SUZ12	chr7:15725147-15727185	H1-hESC	embryonic stem cell:	n/a	n/a
16	SIN3A	chr7:15726029-15727060	H1-hESC	embryonic stem cell:	n/a	n/a
17	TBP	chr7:15726017-15726327	H1-hESC	embryonic stem cell:	n/a	n/a
18	MAX	chr7:15726214-15727244	H1-hESC	embryonic stem cell:	n/a	chr7:15726423-15726432 chr7:15726648-15726656

Variant related genes	Relation type
ENSG00000229108	TF binding region

Extended variants
information (count: 15 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs17169014	0.90[ASN][1000 genomes]
rs35565542	0.82[ASN][1000 genomes]
rs56231386	0.86[AFR][1000 genomes]
rs58847110	0.85[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs61174583	0.85[AFR][1000 genomes]
rs73680417	0.86[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs73680418	0.85[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs73680420	0.83[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7781366	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932168	chr7:15573437-15895294	Flanking Active TSS Enhancers Bivalent Enhancer Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv523199	chr7:15582208-16042596	Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
3	nsv830911	chr7:15666307-15817662	Active TSS Weak transcription Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv428501	chr7:15666307-15817662	Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Bivalent/Poised TSS Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	nsv887736	chr7:15716973-15752122	Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Enhancers Bivalent/Poised TSS Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv887737	chr7:15716973-15753487	Weak transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs35667297	RNF141	trans	lymphoblastoid	RTeQTL

Chromatin state (count:89 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:15719000-15728600	Active TSS	NHDF-Ad	bronchial
2	chr7:15720000-15729800	Active TSS	Right Atrium	heart
3	chr7:15721600-15726600	Active TSS	Osteobl	bone
4	chr7:15722400-15728400	Bivalent/Poised TSS	Fetal Lung	lung
5	chr7:15723800-15726400	Bivalent/Poised TSS	Colon Smooth Muscle	Colon
6	chr7:15723800-15728200	Bivalent/Poised TSS	Left Ventricle	heart
7	chr7:15723800-15728200	Active TSS	Ovary	ovary
8	chr7:15723800-15728600	Bivalent/Poised TSS	Duodenum Smooth Muscle	Duodenum
9	chr7:15724600-15726400	Bivalent/Poised TSS	Fetal Kidney	kidney
10	chr7:15724600-15726600	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
11	chr7:15724600-15727600	Active TSS	Aorta	Aorta
12	chr7:15724600-15728200	Bivalent/Poised TSS	Rectal Smooth Muscle	rectum
13	chr7:15724800-15726600	Bivalent/Poised TSS	ES-WA7 Cell Line	embryonic stem cell
14	chr7:15724800-15726600	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
15	chr7:15724800-15727000	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
16	chr7:15724800-15728200	Flanking Bivalent TSS/Enh	Cortex derived primary cultured neurospheres	brain
17	chr7:15725000-15726400	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
18	chr7:15725000-15726400	Bivalent/Poised TSS	iPS DF 6.9 Cell Line	embryonic stem cell
19	chr7:15725000-15726800	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Female	--
20	chr7:15725000-15726800	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Male	--
21	chr7:15725000-15727000	Bivalent Enhancer	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
22	chr7:15725000-15727000	Flanking Bivalent TSS/Enh	Muscle Satellite Cultured Cells	--
23	chr7:15725000-15727000	Flanking Bivalent TSS/Enh	Brain Inferior Temporal Lobe	brain
24	chr7:15725000-15727000	Flanking Bivalent TSS/Enh	Fetal Adrenal Gland	Adrenal Gland
25	chr7:15725000-15727000	Flanking Bivalent TSS/Enh	Fetal Intestine Small	intestine
26	chr7:15725000-15727200	Flanking Bivalent TSS/Enh	Ganglion Eminence derived primary cultured neurospheres	brain
27	chr7:15725000-15727200	Flanking Bivalent TSS/Enh	Foreskin Melanocyte Primary Cells skin03	Skin
28	chr7:15725000-15727400	Flanking Bivalent TSS/Enh	Fetal Brain Female	brain
29	chr7:15725000-15727800	Flanking Bivalent TSS/Enh	Fetal Muscle Leg	muscle
30	chr7:15725000-15728200	Bivalent/Poised TSS	H9 Cell Line	embryonic stem cell
31	chr7:15725200-15726400	Bivalent/Poised TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
32	chr7:15725200-15726600	Flanking Active TSS	Liver	Liver
33	chr7:15725200-15726800	Flanking Bivalent TSS/Enh	Breast Myoepithelial Primary Cells	Breast
34	chr7:15725200-15726800	Flanking Bivalent TSS/Enh	Colonic Mucosa	Colon
35	chr7:15725200-15726800	Flanking Bivalent TSS/Enh	Duodenum Mucosa	Duodenum
36	chr7:15725200-15726800	Flanking Bivalent TSS/Enh	Stomach Smooth Muscle	stomach
37	chr7:15725200-15727000	Bivalent/Poised TSS	Pancreatic Islets	Pancreatic Islet
38	chr7:15725200-15728200	Flanking Bivalent TSS/Enh	Fetal Stomach	stomach
39	chr7:15725400-15727200	Flanking Bivalent TSS/Enh	iPS DF 19.11 Cell Line	embryonic stem cell
40	chr7:15725400-15727400	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
41	chr7:15725400-15727800	Flanking Bivalent TSS/Enh	Fetal Muscle Trunk	muscle
42	chr7:15725600-15726400	Bivalent/Poised TSS	ES-UCSF4 Cell Line	embryonic stem cell
43	chr7:15725600-15726800	Flanking Bivalent TSS/Enh	Adipose Nuclei	Adipose
44	chr7:15725600-15727800	Bivalent/Poised TSS	Brain Angular Gyrus	brain
45	chr7:15725600-15728000	Bivalent/Poised TSS	NHLF	lung
46	chr7:15725800-15726400	Flanking Bivalent TSS/Enh	Rectal Mucosa Donor 29	rectum
47	chr7:15725800-15726600	Flanking Bivalent TSS/Enh	Rectal Mucosa Donor 31	rectum
48	chr7:15725800-15726800	Flanking Bivalent TSS/Enh	Skeletal Muscle Female	skeletal muscle
49	chr7:15725800-15727200	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells	blood
50	chr7:15725800-15727200	Bivalent Enhancer	Placenta Amnion	Placenta Amnion

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