Variant report

Variant	rs35668148
Chromosome Location	chr3:61553619-61553620
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:61546210..61550751-chr3:61552901..61555613,6	MCF-7	breast:
2	chr3:61553485..61555425-chr3:61565373..61566963,2	MCF-7	breast:
3	chr3:61543024..61544973-chr3:61553525..61555086,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000144724	Chromatin interaction

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs11713144	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12489540	0.85[EUR][1000 genomes]
rs2365956	0.84[EUR][1000 genomes]
rs2886518	0.89[ASN][1000 genomes]
rs2886520	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs55822630	0.88[EUR][1000 genomes]
rs62243005	0.86[EUR][1000 genomes]
rs62268713	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6789675	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7621604	0.82[ASN][1000 genomes]
rs7638985	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432423	chr3:61100255-61606060	Enhancers Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv834711	chr3:61413762-61612539	Flanking Active TSS Enhancers Genic enhancers Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv1008615	chr3:61455419-61679037	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
4	nsv822105	chr3:61531517-61556259	Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Enhancers Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:61550400-61554800	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr3:61550600-61568600	Weak transcription	Pancreas	Pancrea
3	chr3:61550800-61555400	Weak transcription	Rectal Mucosa Donor 31	rectum
4	chr3:61550800-61556800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr3:61550800-61556800	Weak transcription	Ovary	ovary
6	chr3:61550800-61557600	Weak transcription	Psoas Muscle	Psoas
7	chr3:61550800-61558400	Weak transcription	Skeletal Muscle Female	skeletal muscle
8	chr3:61550800-61574200	Weak transcription	Fetal Muscle Trunk	muscle
9	chr3:61551000-61554800	Weak transcription	Fetal Muscle Leg	muscle
10	chr3:61551000-61555800	Weak transcription	Stomach Smooth Muscle	stomach
11	chr3:61551000-61556800	Weak transcription	NH-A	brain
12	chr3:61551000-61557400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr3:61551000-61557600	Weak transcription	Aorta	Aorta
14	chr3:61551000-61557600	Weak transcription	Brain Inferior Temporal Lobe	brain
15	chr3:61551000-61557600	Weak transcription	Right Atrium	heart
16	chr3:61551000-61559800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr3:61551000-61559800	Weak transcription	NHEK	skin
18	chr3:61551000-61561600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
19	chr3:61551200-61555600	Weak transcription	Fetal Lung	lung
20	chr3:61551200-61555800	Weak transcription	Brain Anterior Caudate	brain
21	chr3:61551200-61556400	Weak transcription	Fetal Brain Male	brain
22	chr3:61551200-61557600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
23	chr3:61551200-61560000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
24	chr3:61551400-61555200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
25	chr3:61551400-61555800	Weak transcription	Brain Hippocampus Middle	brain
26	chr3:61551600-61554800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
27	chr3:61551600-61554800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
28	chr3:61551600-61555400	Weak transcription	HUES6 Cell Line	embryonic stem cell
29	chr3:61551600-61556800	Weak transcription	Right Ventricle	heart
30	chr3:61551600-61557600	Weak transcription	Fetal Kidney	kidney
31	chr3:61551600-61559800	Weak transcription	NHLF	lung
32	chr3:61551600-61563800	Weak transcription	Rectal Smooth Muscle	rectum
33	chr3:61551800-61555200	Weak transcription	Brain Angular Gyrus	brain
34	chr3:61551800-61555600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
35	chr3:61551800-61556200	Weak transcription	Muscle Satellite Cultured Cells	--
36	chr3:61552000-61554800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
37	chr3:61552000-61555600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
38	chr3:61552000-61555800	Weak transcription	Osteobl	bone
39	chr3:61552000-61556200	Weak transcription	HSMM	muscle
40	chr3:61552200-61555400	Weak transcription	HUES64 Cell Line	embryonic stem cell
41	chr3:61552200-61555400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
42	chr3:61552200-61555800	Weak transcription	Cortex derived primary cultured neurospheres	brain
43	chr3:61552200-61556800	Weak transcription	NHDF-Ad	bronchial
44	chr3:61552200-61563400	Weak transcription	Colon Smooth Muscle	Colon
45	chr3:61552400-61554800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
46	chr3:61552600-61554600	Weak transcription	H1 Cell Line	embryonic stem cell
47	chr3:61552600-61554800	Weak transcription	HepG2	liver
48	chr3:61552600-61555400	Weak transcription	Adipose Nuclei	Adipose
49	chr3:61552600-61556800	Weak transcription	HUES48 Cell Line	embryonic stem cell
50	chr3:61552600-61557200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung

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