Variant report

Variant	rs35669445
Chromosome Location	chr1:158260229-158260230
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs1042388	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12738822	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12738901	0.87[AMR][1000 genomes]
rs12745422	0.87[AMR][1000 genomes]
rs12751724	0.91[AMR][1000 genomes]
rs3181030	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs34015891	0.87[AMR][1000 genomes]
rs34059172	0.84[AMR][1000 genomes]
rs34120202	0.87[AMR][1000 genomes]
rs34250639	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs34431925	0.87[AMR][1000 genomes]
rs34811385	0.91[AMR][1000 genomes]
rs34813211	0.83[EUR][1000 genomes]
rs34835673	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs35136907	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs35554638	0.87[AMR][1000 genomes]
rs7527282	0.83[AMR][1000 genomes]
rs959518	0.87[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999542	chr1:158015715-158368132	Bivalent Enhancer Genic enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Active TSS Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv872479	chr1:158118787-158484285	Active TSS Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
3	nsv872480	chr1:158153526-158450238	Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
4	nsv831692	chr1:158223459-158392016	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:158253800-158262600	Enhancers	Primary monocytes fromperipheralblood	blood
2	chr1:158257200-158264000	Enhancers	Dnd41	blood
3	chr1:158259000-158261400	Enhancers	Primary hematopoietic stem cells short term culture	blood
4	chr1:158259200-158262600	Enhancers	Primary T cells from cord blood	blood
5	chr1:158259400-158260800	Flanking Active TSS	GM12878-XiMat	blood
6	chr1:158259400-158261000	Flanking Active TSS	Thymus	Thymus
7	chr1:158259400-158261600	Flanking Active TSS	Primary B cells from cord blood	blood
8	chr1:158259400-158261800	Flanking Active TSS	Primary B cells from peripheral blood	blood
9	chr1:158259400-158261800	Flanking Active TSS	Fetal Thymus	thymus
10	chr1:158259400-158262000	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
11	chr1:158259600-158261400	Enhancers	Primary hematopoietic stem cells	blood
12	chr1:158259600-158261400	Active TSS	Primary Natural Killer cells fromperipheralblood	blood
13	chr1:158260000-158260800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links