Variant report

Variant	rs35671127
Chromosome Location	chr15:42358091-42358092
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:42353361..42355428-chr15:42357307..42359309,2	K562	blood:
2	chr15:42357824..42359039-chr15:42425603..42426626,4	MCF-7	breast:

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs2598465	0.81[EUR][1000 genomes]
rs2665202	0.81[EUR][1000 genomes]
rs2724937	0.81[EUR][1000 genomes]
rs2724940	0.81[EUR][1000 genomes]
rs62002275	0.91[EUR][1000 genomes]
rs62004267	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931223	chr15:41989960-42781757	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	81 gene(s)	inside rSNPs	diseases
2	nsv1035998	chr15:42098896-42434254	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	38 gene(s)	inside rSNPs	diseases
3	nsv529687	chr15:42157320-42621682	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	59 gene(s)	inside rSNPs	diseases
4	nsv1049445	chr15:42239738-42830484	Enhancers Strong transcription Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
5	nsv542366	chr15:42239738-42830484	Weak transcription Active TSS Enhancers Strong transcription Bivalent Enhancer Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
6	nsv471683	chr15:42334375-42502982	Enhancers Bivalent Enhancer Genic enhancers Strong transcription Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
7	nsv1043641	chr15:42336584-42381240	Bivalent Enhancer Weak transcription Active TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
8	nsv904131	chr15:42343794-42390223	Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
9	nsv904132	chr15:42343794-42398046	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:42349600-42358200	Weak transcription	Brain Anterior Caudate	brain
2	chr15:42350400-42362600	Weak transcription	Gastric	stomach
3	chr15:42350600-42358400	Weak transcription	NHEK	skin
4	chr15:42350800-42358400	Weak transcription	Rectal Mucosa Donor 31	rectum
5	chr15:42353000-42358400	Weak transcription	Stomach Mucosa	stomach
6	chr15:42353400-42358400	Weak transcription	Pancreas	Pancrea
7	chr15:42353400-42358400	Weak transcription	Skeletal Muscle Male	skeletal muscle
8	chr15:42353800-42358600	Weak transcription	Liver	Liver
9	chr15:42356400-42359200	Enhancers	Fetal Muscle Leg	muscle
10	chr15:42356800-42358200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr15:42356800-42358400	Enhancers	Fetal Thymus	thymus
12	chr15:42356800-42358600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
13	chr15:42356800-42358800	Enhancers	HSMM	muscle
14	chr15:42356800-42359000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr15:42357000-42358200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
16	chr15:42357000-42358200	Enhancers	HSMMtube	muscle
17	chr15:42357000-42359200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr15:42357200-42358200	Enhancers	Fetal Lung	lung
19	chr15:42357200-42358400	Enhancers	Primary hematopoietic stem cells short term culture	blood
20	chr15:42357200-42358600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
21	chr15:42357200-42358600	Enhancers	HUVEC	blood vessel
22	chr15:42357200-42358800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
23	chr15:42357200-42358800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr15:42357200-42359000	Enhancers	Brain Germinal Matrix	brain
25	chr15:42357200-42359200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
26	chr15:42357200-42359200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
27	chr15:42357200-42359200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
28	chr15:42357200-42359400	Flanking Active TSS	HepG2	liver
29	chr15:42357400-42358600	Weak transcription	Brain Substantia Nigra	brain
30	chr15:42357600-42358400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
31	chr15:42357600-42358400	Enhancers	Lung	lung
32	chr15:42357600-42358600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
33	chr15:42357600-42358600	Weak transcription	Brain Inferior Temporal Lobe	brain
34	chr15:42357600-42358800	Bivalent Enhancer	Adipose Nuclei	Adipose
35	chr15:42357800-42358200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
36	chr15:42357800-42358200	Weak transcription	HMEC	breast
37	chr15:42357800-42359000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
38	chr15:42358000-42360600	Weak transcription	Fetal Muscle Trunk	muscle

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