Variant report

Variant	rs35672368
Chromosome Location	chr5:40853949-40853950
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:40853807..40855420-chr5:40862463..40864172,2	K562	blood:
2	chr5:40825699..40827775-chr5:40853184..40855555,2	MCF-7	breast:
3	chr5:40839582..40842415-chr5:40852942..40856062,3	K562	blood:
4	chr5:40853432..40855800-chr5:40856837..40858853,2	K562	blood:

Variant related genes	Relation type
ENSG00000132357	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs1097592	1.00[AMR][1000 genomes]
rs154276	1.00[AMR][1000 genomes]
rs249431	1.00[AMR][1000 genomes]
rs249435	1.00[AMR][1000 genomes]
rs461612	1.00[AMR][1000 genomes]
rs57237835	1.00[AMR][1000 genomes]
rs58170129	1.00[AMR][1000 genomes]
rs60805058	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv880438	chr5:40753877-40900717	Strong transcription Enhancers Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	160 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:48 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:40842400-40854200	Weak transcription	Fetal Stomach	stomach
2	chr5:40842400-40854600	Weak transcription	Brain Hippocampus Middle	brain
3	chr5:40842800-40854000	Weak transcription	Aorta	Aorta
4	chr5:40842800-40856000	Weak transcription	Right Ventricle	heart
5	chr5:40843600-40854000	Weak transcription	Colon Smooth Muscle	Colon
6	chr5:40843600-40857800	Weak transcription	Osteobl	bone
7	chr5:40849800-40854800	Strong transcription	Monocytes-CD14+_RO01746	blood
8	chr5:40849800-40856000	Weak transcription	Primary hematopoietic stem cells	blood
9	chr5:40849800-40857400	Weak transcription	Primary B cells from cord blood	blood
10	chr5:40850200-40854000	Weak transcription	Primary B cells from peripheral blood	blood
11	chr5:40851200-40855400	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr5:40851400-40854400	Weak transcription	HSMMtube	muscle
13	chr5:40851400-40855000	Strong transcription	Primary monocytes fromperipheralblood	blood
14	chr5:40851800-40854400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr5:40851800-40854800	Strong transcription	Lung	lung
16	chr5:40851800-40856200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr5:40852000-40854000	Weak transcription	Stomach Smooth Muscle	stomach
18	chr5:40852000-40854400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
19	chr5:40852000-40854600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
20	chr5:40852000-40854600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
21	chr5:40852000-40854600	Strong transcription	Adipose Nuclei	Adipose
22	chr5:40852000-40854600	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
23	chr5:40852000-40854600	Strong transcription	Spleen	Spleen
24	chr5:40852000-40856000	Weak transcription	Fetal Lung	lung
25	chr5:40852000-40856400	Strong transcription	Primary neutrophils fromperipheralblood	blood
26	chr5:40852200-40854000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
27	chr5:40852200-40854800	Strong transcription	Duodenum Mucosa	Duodenum
28	chr5:40852400-40854000	Strong transcription	Esophagus	oesophagus
29	chr5:40852400-40854200	Strong transcription	Liver	Liver
30	chr5:40852400-40854400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
31	chr5:40852400-40854600	Strong transcription	Gastric	stomach
32	chr5:40852600-40854000	Strong transcription	Primary T cells from cord blood	blood
33	chr5:40852600-40855200	Strong transcription	Placenta	Placenta
34	chr5:40852800-40865200	Weak transcription	Pancreas	Pancrea
35	chr5:40853000-40854600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
36	chr5:40853000-40856200	Weak transcription	Left Ventricle	heart
37	chr5:40853200-40854600	Strong transcription	Fetal Intestine Small	intestine
38	chr5:40853400-40854400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
39	chr5:40853400-40855000	Weak transcription	Small Intestine	intestine
40	chr5:40853400-40857000	Weak transcription	Hela-S3	cervix
41	chr5:40853400-40857600	Weak transcription	HUVEC	blood vessel
42	chr5:40853600-40854400	Strong transcription	Ovary	ovary
43	chr5:40853600-40854600	Active TSS	Brain Substantia Nigra	brain
44	chr5:40853800-40854200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
45	chr5:40853800-40854400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
46	chr5:40853800-40854600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
47	chr5:40853800-40855400	Weak transcription	Duodenum Smooth Muscle	Duodenum
48	chr5:40853800-40856000	Enhancers	K562	blood

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